| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360070 = | 386 (0.870) | 232 (0.700) +CTGATCAGTGAATT |
17/84 | NT | 44.7% | intergenic (‑4/+591) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 561564 | 380 (0.850) | pseudogene (269/279 nt) | exoD | pseudogene, DLP12 prophage; phage‑type exonuclease family;Phage or Prophage Related | |||||
Only 100 of 643 total aligned reads displayed.
GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 | cgcAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGc > 1:13153121/1‑67 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTccc < 1:735906/68‑1 (MQ=255) aaTGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTcc > 1:5356250/1‑67 (MQ=255) gCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCaa > 1:20764980/1‑68 (MQ=255) gCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCaa > 1:27854124/1‑68 (MQ=255) gCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCaa > 1:6931970/1‑68 (MQ=255) aGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCCCCATTGCTCCCCAAAt > 1:2373570/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCTGATATTATCGTGAGGTTGCGTCATCGCCATTGCTCCCCAAAt < 1:21442316/65‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAAt < 1:25129470/65‑1 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:33868595/1‑68 (MQ=255) cTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACa > 1:3342938/1‑68 (MQ=255) gCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACaaa > 1:29488396/1‑67 (MQ=255) cGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAAcc > 1:36833690/1‑68 (MQ=255) gttgtGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt > 1:9543815/1‑68 (MQ=255) gttgtGAGGTACCCGGATATCATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAt < 1:2678904/68‑1 (MQ=255) tgtgAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAAtt > 1:12352424/1‑67 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCa > 1:1143792/1‑67 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCa > 1:37115959/1‑67 (MQ=255) gAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAg < 1:10755301/68‑1 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:3458627/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:36632566/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:9731554/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:11173691/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGcc > 1:16877429/1‑68 (MQ=255) ggTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCACAAATACAAAACCAATTTCAGcc > 1:7725213/1‑68 (MQ=255) cctacCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa < 1:31659610‑M2/65‑29 (MQ=255) gTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCa > 1:605800/1‑68 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:1940613‑M2/1‑37 (MQ=255) tACCCGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaaca > 1:14222828‑M2/1‑37 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:18501683‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:3643731‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:13914695‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:2228805‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatg > 1:19217965‑M2/1‑35 (MQ=255) cccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTg < 1:22467933/68‑1 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatga < 1:14575901‑M2/68‑35 (MQ=255) ccGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGc < 1:23022870/68‑1 (MQ=255) ggATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGcc > 1:8201711/1‑67 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTc > 1:17425513/1‑68 (MQ=255) gATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGACAGTGCCTc > 1:28189837/1‑68 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:21672623‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:31357109‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:21848324‑M2/68‑39 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:5737952‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:35625301‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaa > 1:30306532‑M2/1‑30 (MQ=255) atatTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg > 1:24048238/1‑68 (MQ=255) tattatCGTGAGGTTGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:34890279‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat > 1:11882085‑M2/1‑29 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:15927638‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaat < 1:8960368‑M2/67‑39 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg < 1:15050139/67‑1 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg > 1:33234419/1‑67 (MQ=255) tattatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCg < 1:26456974/67‑1 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:13560396‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:25697799‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:4072490‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:6610015‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaatt < 1:32740500‑M2/67‑40 (MQ=255) attatCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGt > 1:28715443/1‑67 (MQ=255) ttatCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcc < 1:24706533‑M2/68‑42 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:32312402‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:8471764‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:35350172‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:8795066‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattcca < 1:27532846‑M2/67‑43 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:18051122/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:31941683/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:21239423/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:9236117/1‑68 (MQ=255) atCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAt > 1:4508387/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:17879657‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:11722167‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:15474415‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTaattcactgatcagtgataagctgtcaaacatgagaattccat < 1:27166870‑M2/67‑44 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:18837399/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:2933223/1‑68 (MQ=255) tCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtt > 1:34276197/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:12658394/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:10079490/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:9308177/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:6230193/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttt > 1:3597110/1‑68 (MQ=255) cGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAgtt > 1:15313490/1‑68 (MQ=255) gTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAtttt < 1:13419328/68‑1 (MQ=255) gAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCAttttt > 1:21571780/1‑67 (MQ=255) ggATGCGTCATCGCCATTGCTCCCCAAATACAAAAGCAATTTCAGCCAGTGCCTCGTCGATTTTTTCg > 1:7908817/1‑68 (MQ=255) gATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGa > 1:31073717/1‑68 (MQ=255) gATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGa > 1:19553028/1‑68 (MQ=255) aTGCGTCATCGCCATTaattcactgatcagtgataagctgtcaa > 1:23377132‑M2/1‑16 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt > 1:26235546/1‑67 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:20378047/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:4615090/67‑1 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt > 1:32964956/1‑67 (MQ=255) cATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACt < 1:30030827/67‑1 (MQ=255) tCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCg > 1:5034937/1‑68 (MQ=255) ccATTGCTCCCCAAATACAAACCCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGc > 1:18982039/1‑67 (MQ=255) ccATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGc > 1:30649662/1‑67 (MQ=255) aTTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCAcc < 1:24446370/68‑1 (MQ=255) tGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCa > 1:1205423/1‑67 (MQ=255) | GCCGCAATGCAGGCTTGCCGTGTTGTGAGGTACCCGGATATTATCGTGAGGATGCGTCATCGCCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAACTCCGGCACCAT > CP009273/561498‑561631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |