| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 403 (0.910) | 651 (1.490) | 28/110 | NT | 59.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 497 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 1245 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 | atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat > 1:4566000‑M1/40‑66 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:9645061‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:19453431‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:643934‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:33336315‑M1/28‑2 (MQ=255) atcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAATtcca < 1:19777786‑M1/28‑2 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:15474415‑M1/29‑3 (MQ=255) tcgtgaggatgcgtcatcgccattaattcactgatcagTGATAAGCTGTCAAACATGAGAAttccat < 1:30227468‑M1/29‑3 (MQ=255) aCCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATcc < 1:2239663/68‑1 (MQ=255) ccAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAt > 1:21868299/1‑68 (MQ=255) aGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:2910570/1‑67 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAAtt > 1:6760936/1‑66 (MQ=255) gcgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCCGTCAAACATGAGAATTCCGATCCCCAAtt > 1:31420672/1‑66 (MQ=255) accaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCa > 1:13615661/1‑68 (MQ=255) ccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAg < 1:27413563/68‑1 (MQ=255) caTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGt < 1:17729047/68‑1 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTa > 1:16186616/1‑68 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg > 1:10312164/1‑68 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATg > 1:14450763/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:16846727/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:26771079/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:4296246/1‑68 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcg > 1:13121681/1‑68 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:27137903/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcgggcg > 1:5325347/1‑67 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATggcggg < 1:25225876/65‑1 (MQ=255) aGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGGTTATggcgggcg < 1:18639738/67‑1 (MQ=255) cagtgataagCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:26483285‑M1/4‑30 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:10031257/68‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:3652266/68‑1 (MQ=255) cGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGc < 1:8970515/68‑1 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:7233642‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:7557446‑M1/3‑29 (MQ=255) agtgataaGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaa > 1:22145265‑M1/3‑29 (MQ=255) gtgataAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaac > 1:32403115‑M1/2‑28 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:34070065‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:29713643‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacga < 1:18353721‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:2273928‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:29469626‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:11957816‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:35785597‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:21197904‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:18149505‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:26118843‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:8634388‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacg > 1:23099666‑M1/1‑26 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCatccgctgctcattgagaattattttttcgcgggtgaaacga < 1:13849685‑M1/68‑43 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 1:23771650/68‑1 (MQ=255) gatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGc < 1:15858455/68‑1 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact < 1:36813116‑M1/68‑45 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:17372750‑M1/1‑24 (MQ=255) tAAGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgac > 1:27622490‑M1/1‑24 (MQ=255) aGCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcc < 1:25657313‑M1/68‑47 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:4982134‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:7920433‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:4160751‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:3733815‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:31108781‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:15188919‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:20072703‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:24408741‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgact > 1:12697179‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaaccact > 1:13298093‑M1/1‑21 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:11791325/1‑66 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAc > 1:17116990/1‑66 (MQ=255) gCTGTCAAACATCAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCAGCCCGCCAc > 1:602422/1‑66 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:28880715‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:23491113‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:3080496‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:30503994‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctgg < 1:35321198‑M1/68‑50 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCAccc < 1:14129137/66‑1 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCt > 1:5679962/1‑67 (MQ=255) cAAACATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggttt > 1:19022929‑M1/1‑16 (MQ=255) aaCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt < 1:11515392‑M1/68‑55 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:34456422‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgta < 1:31655851‑M1/68‑56 (MQ=255) aCATGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgt > 1:10722344‑M1/1‑13 (MQ=255) aCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGcc > 1:11106272/1‑68 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:16592014‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:28180084‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:29945289‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtaca > 1:32822380‑M1/1‑11 (MQ=255) aTGAGAATTCCatccgcttctcctagagaattattttttcgctggtgaaacgactcctggtttgtaca > 1:24083947‑M1/1‑11 (MQ=255) aTGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGt > 1:3618824/1‑68 (MQ=255) taaTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:8311305/66‑1 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:31978598‑M1/67‑61 (MQ=255) gaATTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaag < 1:35016612‑M1/67‑61 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:28573209/67‑1 (MQ=255) gaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGc < 1:35546940/67‑1 (MQ=255) aaTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcc > 1:27897278‑M1/1‑6 (MQ=255) aaTTCCatccgcgtctccttgagaattattttttcgcaggagaaacgactcctggtttgtacaaagcc > 1:34747128‑M1/1‑6 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcc < 1:9256350‑M1/67‑63 (MQ=255) aTTCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagcc < 1:24883737‑M1/67‑63 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:12255396‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:33705030‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:14764046‑M1/1‑3 (MQ=255) tCCatccgcttctccttgagaattattttttcgcgggtgaaacgactcctggtttgtacaaagccagc > 1:20611429‑M1/1‑3 (MQ=255) tCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGc > 1:21572706/1‑68 (MQ=255) | GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCA > CP009273/360029‑360162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |