| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 403 (0.910) | 651 (1.490) | 28/110 | NT | 59.3% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 497 (1.140) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 1295 total aligned reads displayed.
TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 | cGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCAt > 1:11836676/1‑67 (MQ=255) ggTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATcc > 1:6336804/1‑68 (MQ=255) aTCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGc < 1:11198602/67‑1 (MQ=255) cTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCt > 1:29155714/1‑66 (MQ=255) ttCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTtc > 1:10957238/1‑67 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:17359528/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:16343677/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:7468341/1‑68 (MQ=255) cAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAACCAAATACTGTTTCATCCGCTTCTCCTTga > 1:27663900/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:9655412/1‑68 (MQ=255) gCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGaa > 1:32571462/1‑68 (MQ=255) cagtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa < 1:4780468‑M2/38‑1 (MQ=255) agtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa > 1:33939321‑M2/30‑67 (MQ=255) agtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGaa > 1:22145265‑M2/30‑67 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:12731404‑M2/29‑68 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGCGAATTATTTTTTCGCGGGGGAAACGa < 1:24310588‑M2/42‑1 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:5224077‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:439542‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:3646839‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:30028960‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:5956984‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:8040616‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:21197904‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:26197334‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:14753481‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTCTTTCGCGGGTGAAACg > 1:35003922‑M2/27‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:12048939‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:14421799‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:28824052‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:26661271‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:22649572‑M2/44‑1 (MQ=255) taagctgtcaaacaggtgaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:3071109‑M2/44‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:18038791/68‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:31589227/68‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:567661/68‑1 (MQ=255) aagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:17028307‑M2/24‑67 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:15079991/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:19697717/1‑66 (MQ=255) gggggCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:11483417/1‑66 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGTATTATTTTTTCGCGGGTGAAACGACt > 1:2950764‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:19971849‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:31337316‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:8839178‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:1920338‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:28168571‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:27881440‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:353181‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:18318641‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:4160751‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:1681570‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:24000884‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:6617419‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:22835687‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAAATAATTTTTCGAGGCAGAAACGACt > 1:13169893‑M2/22‑65 (MQ=255) tttcaaacatgagaattacATCCGCTTCTCCTTGAGAATTATTTTTTCGGGGGTGAAACGACTCCTgg < 1:25037289‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:21784341‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:31049658‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:678365‑M2/49‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:23122880/67‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:20701224/67‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:2145066/67‑1 (MQ=255) tCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:23444603/68‑1 (MQ=255) tCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:18844299/68‑1 (MQ=255) tCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:30473606/68‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCTGGTGAAACGACTCCTGGTTTGt < 1:24716113‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:14137613‑M2/15‑68 (MQ=255) cAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:13944320/68‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAGTCCTGGTTTGt > 1:35899488‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:1755256‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:37093181‑M2/55‑1 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:25450089‑M2/12‑68 (MQ=255) aTACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa > 1:23675332/1‑68 (MQ=255) aTACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa < 1:15304359/68‑1 (MQ=255) tACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:33512285/1‑68 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTAGaaa > 1:29797329/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:25835697/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:10056300/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:3679217/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:36161566/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:273262/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:35595897/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:28537009/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:34404533/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:16036646/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:34668355/68‑1 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:31883336‑M2/60‑1 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:33040806‑M2/60‑1 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:32102368‑M2/60‑1 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc < 1:13365848/68‑1 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc > 1:7140985/1‑68 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc < 1:20283182/68‑1 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc > 1:9133036/1‑68 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCca > 1:8408005‑M2/6‑68 (MQ=255) tttCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:18560009/58‑1 (MQ=255) ttCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:10519501/1‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:12294572‑M2/4‑68 (MQ=255) ccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagca < 1:15792911‑M2/66‑1 (MQ=255) cATCCGCTTCTCCGTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagcag < 1:13673681‑M2/67‑1 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:2712628/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:10278957/1‑68 (MQ=255) | TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |