| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 376748 = | NA (NA) | 21 (0.060) | 12/94 | NT | NA | intergenic (‑33/‑59) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA |
| ? | CP009273 | 376768 = | NA (NA) | intergenic (‑53/‑39) | yaiX/insC1 | pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA | |||||
Only 100 of 315 total aligned reads displayed.
GATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG > CP009273/376681‑376780 | gATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAat < 1:31733158/68‑1 (MQ=255) ttattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata > 1:17959689/1‑67 (MQ=255) ttattGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAata > 1:30952427/1‑67 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc > 1:22434891/1‑67 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc > 1:24445952/1‑67 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc > 1:27462501/1‑67 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATc > 1:12710117/1‑67 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:4310762/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:23257059/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:7933294/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:6111868/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:34214978/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:17632882/68‑1 (MQ=255) attGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCa < 1:5947318/68‑1 (MQ=255) tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt > 1:19562382/1‑68 (MQ=255) tgtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt > 1:34041030/1‑68 (MQ=255) tgtgCCAGGACGAATAAACGCAAAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACt > 1:27725592/1‑68 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt > 1:16091820/1‑68 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt < 1:265134/68‑1 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt > 1:27165097/1‑68 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt > 1:10432089/1‑68 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt > 1:29299846/1‑68 (MQ=255) gtgCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACtt < 1:1500502/68‑1 (MQ=255) gtgCCAGGACGAATAAACGCATAAATACTAGACTGGCCCCCTGAATCTCCAGCCAACCAATATCACtt > 1:13952007/1‑68 (MQ=21) ctgCCAGGCCGAATAAACGCATAATTACAAGACTGGCCCCATGAATCTCCAGACACCCAATATCCCtt > 1:2528512/2‑68 (MQ=21) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCAGTTaa > 1:6884232/1‑68 (MQ=255) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTaa > 1:7860307/1‑68 (MQ=255) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTaa > 1:6629700/1‑68 (MQ=255) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTaa > 1:19738092/1‑68 (MQ=255) gCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTaa > 1:37158931/1‑68 (MQ=255) cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTaaa < 1:36680469/67‑1 (MQ=255) cAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAAt > 1:12184628/1‑68 (MQ=255) gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAg > 1:30708775/1‑68 (MQ=255) gACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAg > 1:3288987/1‑68 (MQ=255) aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATaa < 1:9549196/66‑1 (MQ=255) aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATa < 1:34122187/65‑1 (MQ=255) aCGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt > 1:13598614/1‑68 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTTAATAAGTg > 1:32656590/1‑68 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:16673716/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:10954155/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:18587401/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:26066273/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:13278652/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:2513333/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:20676787/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:23629865/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:1478542/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:20818429/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:4061020/67‑1 (MQ=255) cGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTg > 1:28420903/1‑68 (MQ=255) cGAATAAACGCATAATTACAACACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGt < 1:30122974/67‑1 (MQ=255) aTAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATa > 1:33668456/1‑68 (MQ=255) tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg > 1:7124621/1‑68 (MQ=255) tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg > 1:6390881/1‑68 (MQ=255) aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg > 1:10640099/1‑67 (MQ=255) aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt < 1:33126670/68‑1 (MQ=255) aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt < 1:33781087/68‑1 (MQ=255) aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt < 1:8240627/68‑1 (MQ=255) aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt < 1:4133198/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:3551060/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:1107648/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:5588504/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:5245269/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:1161396/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:33269429/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:11372684/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:5024625/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:10841550/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:8928333/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:22366/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:21470652/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:23433087/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:24726194/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:20146784/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:8505568/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:18999320/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:16930826/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:10276192/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:7358211/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:29848056/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:6974717/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:32210759/68‑1 (MQ=255) aaCGCATAATTACTAGACTGGCCCCCTCAATCCCCAGACAACCAATATCACTTAACTAAGTGATAGTc < 1:34745378/68‑1 (MQ=17) aaCGCATAATTACTAGACTGACCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:10123280/68‑1 (MQ=255) aaCGCATAACCACCAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAgac < 1:36149860/68‑3 (MQ=11) cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt > 1:11985843/1‑68 (MQ=255) cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt > 1:15929727/1‑68 (MQ=255) cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt > 1:16292206/1‑68 (MQ=255) gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa < 1:3698667/68‑1 (MQ=255) gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa > 1:21910072/1‑68 (MQ=255) aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa < 1:29035235/67‑1 (MQ=40) aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt < 1:14335235/68‑1 (MQ=40) aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt < 1:10780370/68‑1 (MQ=40) aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt < 1:29590364/68‑1 (MQ=40) aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt < 1:26432952/68‑1 (MQ=35) aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt > 1:21792400/1‑68 (MQ=35) ttACTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa > 1:15235184/1‑68 (MQ=18) ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc < 1:25599969/59‑1 (MQ=33) ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa > 1:30312748/1‑68 (MQ=33) tACTAGACTGGCCCCCTGGTTCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg < 1:34535281/68‑1 (MQ=255) | GATTATTGTGCCAGGACGAATAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG > CP009273/376681‑376780 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |