New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 376748 =NA (NA)21 (0.060) 12/94 NT NA intergenic (‑33/‑59) yaiX/insC1 pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA
?CP009273 376768 = NA (NA)intergenic (‑53/‑39) yaiX/insC1 pseudogene, interrupted by IS2A, acetyltransferase homolog; nonfunctional; interruped by IS2; putative transferase/IS2 repressor TnpA

Only 100 of 138 total aligned reads displayed.

TAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG  >  CP009273/376701‑376780
                                                                   |            
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:30410702/1‑68 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:7124621/1‑68 (MQ=255)
tAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:6390881/1‑68 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:10140963/1‑67 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:10640082/1‑67 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAg              >  1:10640099/1‑67 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:33781087/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:23373603/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:21595376/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:33126670/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:1517745/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:4133198/68‑1 (MQ=255)
 aaaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGt             <  1:8240627/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAAGCAATATCAATTAAATAAGTGATAGTc            <  1:36376097/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:8505568/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:22708500/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:9177689/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:23433087/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:8540654/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:23514999/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25054640/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25298425/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25341788/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25643040/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:25723522/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27203515/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:29237783/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:30133246/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:6974717/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:32089140/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:32210759/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:33269429/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:33680215/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:26410058/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:7918935/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:36682292/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:7358211/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:5245269/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:5559266/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:5588504/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:14928059/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:15796280/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:1161396/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:16238/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:1626022/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:11667068/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:11413557/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:1670153/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:13500717/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:16930826/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:11122016/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:18524497/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:1107648/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10841550/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:18770798/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:19595003/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20065629/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:20146784/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10636701/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:21470652/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10276192/68‑1 (MQ=255)
  aaCGCATAATTACTAGACTGGCCCCCTCAATCCCCAGACAACCAATATCACTTAACTAAGTGATAGTc            <  1:34745378/68‑1 (MQ=17)
  aaCGCATAATTACTAGACTGACCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:10123280/68‑1 (MQ=255)
  aaCGCATAACCACCAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAgac            <  1:36149860/68‑3 (MQ=11)
  aaCGCAAAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTc            <  1:27138657/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           <  1:14056962/68‑1 (MQ=255)
   aCGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCt           <  1:9457372/68‑1 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:15365800/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:6396393/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:15929727/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:11985843/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:16292206/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:11180266/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:7884450/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:4956104/1‑68 (MQ=255)
    cGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCtt          >  1:429353/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:6646467/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:6913704/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:34299151/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:3698667/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:3946936/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         >  1:21910072/1‑68 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:24638840/68‑1 (MQ=255)
     gCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTa         <  1:33448503/68‑1 (MQ=255)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTaa        <  1:29035235/67‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:14335235/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:10780370/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:18526207/68‑1 (MQ=40)
       aTAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAAt       <  1:29590364/68‑1 (MQ=40)
         aaTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCCTAAt       >  1:34111392/1‑66 (MQ=255)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    >  1:21835042/1‑68 (MQ=35)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    >  1:21792400/1‑68 (MQ=35)
          aTTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACt    <  1:26432952/68‑1 (MQ=35)
           ttACTAGACTGGCCTCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:680647/1‑68 (MQ=18)
           ttACTAGACTGGCCCCCTGCATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:15235184/1‑68 (MQ=18)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:26509784/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:30312748/1‑68 (MQ=33)
           ttACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTa   >  1:34999754/1‑68 (MQ=33)
            tACTAGACTGGCCCCCTGGTTCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:34535281/68‑1 (MQ=255)
            tACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAg  <  1:30813700/68‑1 (MQ=31)
                                                                   |            
TAAACGCATAATTACTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAG  >  CP009273/376701‑376780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.