New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 442673 =353 (0.790)34 (0.100) 11/90 NT 9.1% coding (489/891 nt) cyoE protoheme IX farnesyltransferase
?CP009273 442734 = 396 (1.110)coding (428/891 nt) cyoE protoheme IX farnesyltransferase

Only 100 of 681 total aligned reads displayed.

TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740
                                                                   |                                                                   
tcggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:25414330‑M1/1‑1 (MQ=255)
tcggcgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggc                                                                     <  1:29786226‑M1/1‑1 (MQ=255)
tAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATC                                                                     <  1:12695935‑M1/68‑1 (MQ=255)
    cgtttatagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggcgat                                                                  <  1:21776255‑M1/4‑3 (MQ=255)
     cGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGC                                                                >  1:35499744‑M1/1‑68 (MQ=255)
       ttatagcctgtacatgacacgccactctgtctacggcacgttgattggttcgctctccggCGCTgcg                                                               >  1:5527470‑M1/61‑67 (MQ=255)
         atagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgcc                                                             <  1:11032332‑M1/9‑1 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:34372327‑M1/58‑68 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc                                                           >  1:31518548‑M1/58‑68 (MQ=255)
          tagcctgtacatgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccg                                                            <  1:13971995‑M1/10‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:1076636/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:28342417/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:14334957/68‑1 (MQ=255)
           aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt                                                          <  1:19111221/68‑1 (MQ=255)
             ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTa                                                         >  1:34871356/1‑67 (MQ=255)
              gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATc                                                       >  1:29020127/1‑68 (MQ=255)
                gATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGa                                                     <  1:8886634/68‑1 (MQ=255)
                    gCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTc                                                 >  1:13479257/1‑68 (MQ=255)
                          gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt                                           >  1:18616387/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:30743507/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:20043170/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:2037589/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:24533886/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:21336345/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:23053171/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:33120850/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:33571732/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:3521899/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:15912183/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:36041166/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:36678956/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:7332472/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          >  1:5910496/1‑68 (MQ=255)
                           aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCAGCGCCGCTATCGAACTCCCCGGt                                           >  1:11705472/1‑67 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCATGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:12273425/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:25866741/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:6951994/67‑1 (MQ=255)
                            gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt                                          <  1:1044069/67‑1 (MQ=255)
                             tGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTa                                         >  1:4825676/1‑67 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       >  1:23178932/1‑68 (MQ=255)
                              gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc                                       >  1:22554149/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:2620092/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:27271272/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:29268557/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:521036/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:32205309/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:1633622/1‑68 (MQ=255)
                                ggCATCTGCCACAGGCTGAAGATAGCCAACAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:30014248/1‑68 (MQ=255)
                                 gCATCTGCCACAGGCTGAAGATCGCCAGCAGGATCGCTGCGCCGCTATCGATCTCACCGGTTACCGc                                     >  1:22279518/1‑67 (MQ=255)
                                 gCATCAGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     >  1:35821175/1‑67 (MQ=255)
                                  cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc                                     <  1:1503243/66‑1 (MQ=255)
                                   aTCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcaca                                  >  1:13267670/1‑68 (MQ=255)
                                     ctacggcacgttgattggttcgctctccggCGCTGCGCCGCTAGCGGACGCACCGGTTACCGCCCagg                                <  1:24167389‑M1/38‑2 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:6181410/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:32775085/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:18754826/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:8098218/68‑1 (MQ=255)
                                     cTGCCACAGGCTGAAGATAGCCAGCAGGAGCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt                                <  1:17408770/68‑1 (MQ=255)
                                      tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               <  1:22046665/68‑1 (MQ=255)
                                       gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa                               >  1:2870608/1‑67 (MQ=255)
                                        ccACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAg                              >  1:23694957/1‑67 (MQ=255)
                                          gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg                           <  1:8642552‑M1/43‑1 (MQ=255)
                                            aGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagt                          >  1:16968927‑M1/1‑34 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc                        >  1:11426211/1‑67 (MQ=255)
                                              gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc                        >  1:33261512/1‑67 (MQ=255)
                                                   ttggttcgctctccggCGCTGCGGCGCTATCGATCTCACCGGTTACCGCCCAGTAGCCGCTCACcggc                  <  1:36430395‑M1/52‑1 (MQ=255)
                                                   aGATAGCCAGCAGGTTCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagc                  >  1:9050184‑M1/1‑27 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCcggtgctcggctactgtgcggtaaccggtgagttcgatagc                  >  1:7883755‑M1/1‑27 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgc                  >  1:14531779‑M2/1‑66 (MQ=255)
                                                   aGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgc                  <  1:18387344‑M2/68‑3 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGGcggtgatcggctgctgtgcggtaaccggtgagttcgattgcg                 >  1:31274011‑M1/1‑26 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtacccggtgagttcgatagcg                 >  1:4164213‑M1/1‑26 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:6624943‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:16600056‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:11664070‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:1525683‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:26429479‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:22762639‑M2/68‑4 (MQ=255)
                                                    gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg                 <  1:4916701‑M2/68‑4 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:13008557‑M2/1‑63 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:19704573‑M2/1‑63 (MQ=255)
                                                      tAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggc               >  1:399068‑M2/1‑63 (MQ=255)
                                                       aGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcg              >  1:20502191‑M2/1‑62 (MQ=255)
                                                        gCCAGCAGGCTCGCTGCGCCGCTATCGCACACACCGGTTACCGCACTGTCGCCGATCACCGGCGgcgc             >  1:969810/1‑68 (MQ=255)
                                                         ccAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcc            <  1:10053226‑M2/68‑9 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:15541736‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:24936927‑M2/1‑55 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:14756715/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:4450708/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:3856152/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:20843603/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:829772/67‑1 (MQ=255)
                                                              agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc        <  1:27793496/67‑1 (MQ=255)
                                                              agGAGCGCGGCGCCGCTTTCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc          >  1:3620328‑M2/1‑55 (MQ=255)
                                                                 aTCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgat       >  1:12160465‑M1/1‑13 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:33801835/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:31689615/65‑1 (MQ=255)
                                                                 aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc       <  1:26859228/65‑1 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  >  1:17885351‑M1/1‑68 (MQ=255)
                                                                   CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga  <  1:19530008‑M1/68‑1 (MQ=255)
                                                                   |                                                                   
TAAAGCGGAAAATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGA  >  CP009273/442606‑442740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.