| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 315 (0.710) | 12 (0.030) | 6/94 | NT | 5.2% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 175 (0.470) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 419 total aligned reads displayed.
GACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719510‑719643 | gACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAgg < 1:11256833/68‑1 (MQ=255)cgaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtgg < 1:23545426‑M1/2‑1 (MQ=255) gaaaagataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtgg > 1:6361482‑M1/66‑67 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:19957367/1‑68 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:21496998/1‑68 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:2499365/1‑68 (MQ=255) gggAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcg > 1:2811974/1‑68 (MQ=255) aaagaaaccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcg > 1:33013473‑M1/64‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:10598828‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc < 1:25986613‑M1/7‑1 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:32825271‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGggcggc > 1:22085714‑M1/62‑68 (MQ=255) agataccgccgccatgctggaagggctggctggtctgccgttaaaacgccaggcgtaccgtGggcggc > 1:15346778‑M1/62‑68 (MQ=255) aaCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGggcggc < 1:26262319/67‑1 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCa > 1:14826616/1‑67 (MQ=255) aCCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGACGGCGGCa > 1:22836208/1‑67 (MQ=255) taccgccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCAt > 1:5849665‑M1/59‑67 (MQ=255) gccgccatgctggaagggctggctgttctgccgttaaaacgccaggcgtaccgtGGGCGGCATCgaga > 1:13540810‑M1/55‑68 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:3124527/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:34817915/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:132510/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:5053412/1‑67 (MQ=255) cgcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCgaga > 1:24321572/1‑67 (MQ=255) gcATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGCGGGCGGCATCGAGCTc > 1:25287775/1‑68 (MQ=255) gcATTACTGTGCGCCAGTTACTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATc > 1:29274713/1‑68 (MQ=255) tACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCaa > 1:12761212/1‑66 (MQ=255) aCTGTGCGCCAGTTCGTCCATTGAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:34302520/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:32152668/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:22393832/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:33154126/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:34166114/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:9330863/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:15962305/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:18628904/1‑67 (MQ=255) aCTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAAc > 1:12289707/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:19709082/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:30440848/1‑67 (MQ=255) tgtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:35979044/1‑67 (MQ=255) tgtgCGCAAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:34561832/1‑67 (MQ=255) gtgCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTc > 1:24746496/1‑66 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGCTCAAACTCGCTg > 1:8101627/1‑68 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:1731584/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCt < 1:17133852/67‑1 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:36812766/1‑68 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:561122/1‑68 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:33948604/1‑68 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:15084859/1‑68 (MQ=255) gcgcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTg > 1:16502835/1‑68 (MQ=255) gcgcCAGTTCGTCCATAAAGATCAGCGCCTGGAGGAGGGCGAGGGCGGCATCGAGATCAAACTCGATg > 1:16319561/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGCTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:23930493/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:31646519/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:264833/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:23364000/1‑68 (MQ=255) gcCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGat > 1:27696009/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:20797180/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:16812714/1‑68 (MQ=255) ccAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGata > 1:25744574/1‑68 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:27566038/1‑67 (MQ=255) aGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGatat > 1:8789610/1‑67 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:10496237/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:13851579/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:36532921/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:26834890/1‑68 (MQ=255) ttCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgcc > 1:8612137/1‑68 (MQ=255) cGTCCATTAAGAGCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATgccgc < 1:2829040/68‑1 (MQ=255) ccATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGccc > 1:33356583/1‑67 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:30055409/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:1541357/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:21806277/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:19005223/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:13921870/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:18246842/68‑1 (MQ=255) cgttaaaacgccaggcgttccgtGGGCGGCATCGCGCTCAAACTCGCTGATATGCCGCCCACGGTAc < 1:21219779‑M1/44‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCTAACTCGCTGATATGCCGCCCACGGTACg < 1:37044628/66‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:7306508/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:14575869/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:1311156/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:7716797/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:33629736/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:14218703/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:383363/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGcc > 1:1939076/1‑68 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGcc > 1:27173693/1‑68 (MQ=255) ggaGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCCCTGATATGCCGCCCACGGTACg < 1:16162615/64‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:6833203/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:900555/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:2217091/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:35468481/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:1780645/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGATGATATGCCGCCCACGGTACGCCTGGCg > 1:36238716/1‑68 (MQ=255) cgccaggcgtaccgtGGGCGGCATCGAGATCAAGCTCGCTGATATGCCGCCCGCGGTACGcctggggg < 1:4160325‑M1/53‑4 (MQ=255) cgccaggcgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGt < 1:29795891‑M1/53‑1 (MQ=255) gggCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGttt < 1:35295311/68‑1 (MQ=255) gggCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGttt < 1:29406334/68‑1 (MQ=255) gcggcgGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:11808316/1‑68 (MQ=255) ggcgggcgAGGGCGGCATCGAGATCAAACTCGCTGTTATGCCGCCCACGGTACGCCTGGCGTTTTaa < 1:32401749/67‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGGTTTACCGGCAGa < 1:28991221‑M1/65‑1 (MQ=255) cgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCGGGCGTTTTAACGGCAg < 1:8546181‑M1/64‑1 (MQ=255) aGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAc > 1:1027742/1‑68 (MQ=255) GGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCTCGGTACGCCTGGCGTTTTAACGGCAGAAca < 1:10156515‑M1/68‑1 (MQ=255) | GACGGGAACCTGGCGCATTACTGTGCGCCAGTTCGTCCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACA > CP009273/719510‑719643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |