| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 719576 = | 315 (0.710) | 12 (0.030) | 6/94 | NT | 5.2% | coding (295/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein |
| ? | CP009273 | 719613 = | 175 (0.470) | coding (258/2685 nt) | kdpD | fused sensory histidine kinase in two‑component regulatory system with KdpE: signal sensing protein | |||||
Only 100 of 354 total aligned reads displayed.
CCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719546‑719680 | tctgccgttaaaacgccaggcgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg > 1:36477005‑M1/29‑68 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:9271010/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:21806277/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:10780084/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:18246842/68‑1 (MQ=255) aTTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACg < 1:19005223/68‑1 (MQ=255) ctgccgttaaaacgcccggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACg < 1:8546181‑M2/3‑1 (MQ=255) tAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGt > 1:4007893/1‑68 (MQ=255) gccgttaaaacgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACGGTa < 1:16490267‑M2/6‑1 (MQ=255) aaGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTa < 1:6449185/68‑1 (MQ=255) aaGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTa < 1:8633208/68‑1 (MQ=255) aGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc < 1:30235753/68‑1 (MQ=255) aGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATAAGCCGCCCACGGTAc < 1:18633693/68‑1 (MQ=255) gATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTAc > 1:34073539/1‑67 (MQ=255) cgttaaaacgccaggcgttccgtGGGCGGCATCGCGCTCAAACTCGCTGATATGCCGCCCACGGTAc < 1:21219779‑M1/44‑1 (MQ=255) aTCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:32774295/1‑67 (MQ=255) tccgcgcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGc < 1:35406200/64‑1 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTTATATGCCGCCCACGGTACg > 1:15363658/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:29183669/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:25837557/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:30079763/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:17278134/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:22200964/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:29427619/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:20269579/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:33629736/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:33982814/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACg > 1:36934107/1‑66 (MQ=255) tCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGcc > 1:1939076/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGc < 1:26130064/67‑1 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:6833203/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:900555/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCg > 1:24130998/1‑68 (MQ=255) gcCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGATGATATGCCGCCCACGGTACGCCTGGCg > 1:36238716/1‑68 (MQ=255) acgccaggcgtaccgtgggcggcatatcagcgagtttgatctcgatgccgcccACGGTACGCCTGGCg < 1:29795891‑M2/15‑1 (MQ=255) gcggcgGGCGCGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTa > 1:712343/1‑68 (MQ=255) ggcgggcgAGGGCGGCATCGAGATCAAACTCGCTGTTATGCCGCCCACGGTACGCCTGGCGTTTTaa < 1:32401749/67‑1 (MQ=255) cgtaccgtGGGCGGCATCGAGATCAACCTCGCTGATATGCCGCCCCCGGTACGCCTGGCGGtttagcg < 1:7673592‑M1/60‑4 (MQ=255) cgtaccgtGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACg < 1:12825091‑M1/60‑1 (MQ=255) gtaccgggggcggcatatcagcgagtttgatcgcgatgccgcccACGGTACGCCTGGCGTTTTAACg < 1:9077004‑M2/23‑1 (MQ=255) cgAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAg < 1:32994931/67‑1 (MQ=255) aGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAc > 1:1027742/1‑68 (MQ=255) GGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCTCGGTACGCCTGGCGTTTTAACGGCAGAAca < 1:10156515‑M1/68‑1 (MQ=255) GCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcag < 1:14067773‑M1/67‑1 (MQ=255) GGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagcca < 1:23411284‑M1/68‑1 (MQ=255) CATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccag > 1:27202468‑M1/1‑67 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc < 1:13928860‑M1/67‑1 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc > 1:16808676‑M1/1‑67 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc > 1:14754060‑M1/1‑68 (MQ=255) ATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACagccagcc > 1:33414970‑M1/1‑68 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAAcagccagc < 1:5137075‑M1/66‑1 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGccc > 1:13199303‑M1/1‑68 (MQ=255) TCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGccc > 1:28677011‑M1/1‑68 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:35275649/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:21256922/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:31601067/68‑1 (MQ=255) cGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCt < 1:30796732/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:37161729/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:6019921/68‑1 (MQ=255) gagaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCtt < 1:26533959/68‑1 (MQ=255) gaTCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTcc > 1:35506715/1‑68 (MQ=255) tCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCa > 1:12197585/1‑67 (MQ=255) tCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCa > 1:18457656/1‑67 (MQ=255) cAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGc < 1:14467187/68‑1 (MQ=255) aaaCTCGCTGATATTCCGCCCTCGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCa < 1:11811963/68‑1 (MQ=255) aaCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCAt > 1:7712058/1‑68 (MQ=255) aCTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:32003440/1‑68 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:12921797/1‑67 (MQ=255) cTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATg > 1:34229720/1‑67 (MQ=255) tCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggc > 1:4637351/1‑68 (MQ=255) tCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggc > 1:2805175/1‑68 (MQ=255) tCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggc > 1:15325599/1‑68 (MQ=255) gCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcgg < 1:17785248/68‑1 (MQ=255) tctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAAcag > 1:8316892‑M2/15‑46 (MQ=255) tctcgatgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATggcggc > 1:13540810‑M2/15‑68 (MQ=255) tGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGgcggcg < 1:28360116/68‑1 (MQ=255) tGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGgcggcg < 1:19602924/68‑1 (MQ=255) gATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGcggcgg > 1:16959506/1‑68 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:8119589/67‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:33206894/67‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGt < 1:11514532/67‑1 (MQ=255) tatGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:22815197/1‑68 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCCGCATGGCGGCGGTa > 1:25012737‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:2384438‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:34827809‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:5849665‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:24623362‑M2/10‑67 (MQ=255) atgccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTa > 1:2084197‑M2/10‑67 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:22085714‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:10598828‑M2/61‑1 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:21499925‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:27627673‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt > 1:16607082‑M2/8‑68 (MQ=255) gccgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCt < 1:1642914‑M2/61‑1 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTTTCttt > 1:16092729‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:15884626‑M2/6‑68 (MQ=255) cgcccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCttt > 1:4206990‑M2/6‑68 (MQ=255) ccACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTc > 1:12060756‑M2/3‑67 (MQ=255) cACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGc < 1:13871952‑M2/67‑1 (MQ=255) aCGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGcc < 1:2902314/68‑1 (MQ=255) | CCATTAAGATCAGCGCCGGGCGGCGGGCGAGGGCGGCATCGAGATCAAACTCGCTGATATGCCGCCCACGGTACGCCTGGCGTTTTAACGGCAGAACAGCCAGCCCTTCCAGCATGGCGGCGGTATCTTTTCGCC > CP009273/719546‑719680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |