New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 772557 =124 (0.280)5 (0.010) 4/98 NT 6.1% coding (760/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex
?CP009273 772577 = 45 (0.120)coding (780/1266 nt) tolA membrane anchored protein in TolA‑TolQ‑TolR complex

Only 100 of 217 total aligned reads displayed.

TGCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGC  >  CP009273/772493‑772624
                                                                |                                                                   
tgcagcttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcagc                                                                    >  1:7679526‑M1/65‑66 (MQ=255)
tgcagcttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcagc                                                                    >  1:15827385‑M1/65‑66 (MQ=255)
 GCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAANAAAGCNGCAGAAAAAGCGgctgc                                                                 >  1:7494464‑M1/1‑68 (MQ=255)
 GCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGgctgc                                                                 >  1:449437‑M1/1‑68 (MQ=255)
    GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGATAAAGCGGCTGCTGa                                                              <  1:19266874‑M1/68‑1 (MQ=255)
    GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:33642373‑M1/68‑1 (MQ=255)
    GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:35766452‑M1/68‑1 (MQ=255)
    GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:1737153‑M1/68‑1 (MQ=255)
    GCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGa                                                              <  1:27585747‑M1/68‑1 (MQ=255)
      ttttgccgctgccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGctgctg                                                               >  1:30734104‑M1/59‑65 (MQ=255)
      TGATAAGAAAGTGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGctgctg                                                               >  1:31450806‑M1/1‑65 (MQ=255)
      TGATAAGAAAGCGGCATCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGaa                                                             >  1:17047383‑M1/1‑67 (MQ=255)
      TGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGctgctg                                                               >  1:32309844‑M1/1‑65 (MQ=255)
      TGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGctgctg                                                               >  1:16881153‑M1/1‑65 (MQ=255)
      TGATAACAAAGCGGCAGCAGAGAAACCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGaaa                                                            >  1:10932934‑M1/1‑68 (MQ=255)
        tctcggcggccgctttcttatccgcggccgccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          <  1:24277797‑M2/36‑1 (MQ=255)
         tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAgg                                                         <  1:18337907/68‑1 (MQ=255)
         tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          >  1:10132196/1‑67 (MQ=255)
         tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          <  1:29006720/67‑1 (MQ=255)
         tAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          <  1:20676406/67‑1 (MQ=255)
         aaaGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAg                                                          <  1:32084991/66‑1 (MQ=255)
           ctgctgccgctttcttatcagctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAggcc                                                       >  1:4948610‑M2/30‑67 (MQ=255)
           aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:13648604/1‑68 (MQ=255)
           aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:30093911/1‑68 (MQ=255)
           aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:18957211/1‑68 (MQ=255)
           aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:17459067/1‑68 (MQ=255)
           aGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgca                                                       >  1:27727264/1‑68 (MQ=255)
           aGAAAGCGCCAGCAGAGAACGCTGCAGCCCACAAAATAGCAGCAGAAAAAGCGGCTGCTGAAAAGgc                                                        >  1:10459480/1‑67 (MQ=38)
             aaaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagc                                                     >  1:5739909/1‑68 (MQ=255)
             aaaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAACgcagc                                                     >  1:24486585/1‑68 (MQ=255)
              aaccGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    <  1:17159130/65‑1 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCTGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:14679456/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAATGgcagca                                                    >  1:23743182/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:16509666/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:19224166/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:933982/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:12592099/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:15262024/1‑68 (MQ=255)
              aaGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:23224946/1‑68 (MQ=255)
              aaGCCGCAGCATACTATGCTGCAGGCTACTTAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagc                                                     <  1:34904669/67‑1 (MQ=19)
               aGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:36042837/1‑67 (MQ=255)
               aGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:6342096/1‑67 (MQ=255)
                gccgcttttttgtctgcggcggctttttctgccgctgctttcttatcaGCTGCTGAAAAGGCagcagc                                                  >  1:22062953‑M1/49‑68 (MQ=255)
                gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGgcagca                                                    >  1:26262665/1‑66 (MQ=255)
                gCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:1753510/68‑1 (MQ=255)
                gCGGAAGCAGAGAAACCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTTCTGAAAAGGCagcagc                                                  <  1:5452703/68‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:27920920/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:27144695/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:2859953/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:31009555/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:3113693/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:33577967/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:36964068/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:15952987/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:13969095/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:6940991/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCagcagc                                                  <  1:10221765/66‑1 (MQ=255)
                  ggCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTg                                                <  1:21083338/68‑1 (MQ=255)
                    cagcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGa                                               <  1:26034721/67‑1 (MQ=255)
                     agcagAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGAt                                              <  1:36332277/67‑1 (MQ=255)
                        agagAATGCTGCAGGCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:17927548/65‑1 (MQ=255)
                        agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:284313/65‑1 (MQ=255)
                        agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATa                                             <  1:23995658/65‑1 (MQ=255)
                        agagAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAg                                           <  1:7950069/67‑1 (MQ=255)
                           gaAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGa                                          <  1:4243710/65‑1 (MQ=255)
                             aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:29372943/1‑68 (MQ=255)
                             aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:36865823/1‑68 (MQ=255)
                             aaGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGAGAAGAAagca                                     >  1:20932775/1‑68 (MQ=255)
                              agctgcagccGACAAAAAAGCAGCAGAAAAATCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagca                                     >  1:15117030‑M2/11‑67 (MQ=255)
                               gctgccgccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:8128883‑M2/10‑68 (MQ=255)
                               gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:14719356‑M2/10‑68 (MQ=255)
                               gctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAagcagc                                   >  1:33939505‑M2/10‑68 (MQ=255)
                                ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCg                                  >  1:22766855‑M2/9‑68 (MQ=255)
                                ctgcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGAAGCAGCTGATAAGAAAGCAGCg                                  >  1:10283905‑M2/9‑68 (MQ=255)
                                  gcagccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGc                                >  1:856060‑M2/7‑68 (MQ=255)
                                    agccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                              >  1:11842414‑M2/5‑68 (MQ=255)
                                    agccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAg                              >  1:3857737‑M2/5‑68 (MQ=255)
                                     gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                             >  1:12228833‑M2/4‑68 (MQ=255)
                                     gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                             >  1:14487927‑M2/4‑68 (MQ=255)
                                     gccGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGa                             >  1:9646499‑M2/4‑68 (MQ=255)
                                       cGACAAAAAAGCATCTGAAAAAGCGGCTGCTTAAAAGGCATCAGCTGATAAGAAAGCAGCGGCAg                              <  1:29872660‑M2/64‑1 (MQ=255)
                                              aaaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgc                    <  1:25574402/68‑1 (MQ=255)
                                               ccgctgctttcttatcaGCTGGTGAAAAGGCAGCAGCTGATTAGAAAGCAGCGGCAGCAAAAgccgcc                   <  1:24080311‑M1/51‑1 (MQ=255)
                                               aaGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAgccgcc                   <  1:24683772/68‑1 (MQ=255)
                                                 gctgctttcttatcaGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCcgccgc                 <  1:12859503‑M1/53‑1 (MQ=255)
                                                      agAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGAc             <  1:13103768/67‑1 (MQ=255)
                                                         aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaa           <  1:29438571/66‑1 (MQ=255)
                                                         aaaaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACa            <  1:35058800/65‑1 (MQ=255)
                                                           aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa       >  1:23620510/1‑68 (MQ=255)
                                                           aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa       >  1:7280146/1‑68 (MQ=255)
                                                           aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa       >  1:34376181/1‑68 (MQ=255)
                                                           aaGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACaaaaaa       >  1:26582933/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:33205202/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:13221846/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:33249743/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:19687234/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:19134563/1‑68 (MQ=255)
                                                              cGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcg    >  1:18111554/1‑68 (MQ=255)
                                                                GCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc  <  1:2133751‑M1/68‑1 (MQ=255)
                                                                GCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAagcggc  <  1:30418393‑M1/68‑1 (MQ=255)
                                                                |                                                                   
TGCAGCTGATAAGAAAGCGGCAGCAGAGAAAGCTGCAGCCGACAAAAAAGCAGCAGAAAAAGCGGCTGCTGAAAAGGCAGCAGCTGATAAGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGC  >  CP009273/772493‑772624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.