| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 910549 = | 83 (0.190) | 6 (0.020) | 3/98 | NT | 7.7% | intergenic (‑236/+259) | ybjE/aqpZ | putative transporter/aquaporin Z |
| ? | CP009273 | 910582 = | 72 (0.180) | intergenic (‑269/+226) | ybjE/aqpZ | putative transporter/aquaporin Z | |||||
Only 100 of 334 total aligned reads displayed.
TGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC > CP009273/910484‑910616 | tggtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAgg > 1:5755423/1‑67 (MQ=35)tggtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGACGGGGCAGCCCACATGGATTTGGGCTGAgg < 1:32597017/67‑1 (MQ=255)gggctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcggg > 1:35995772‑M1/66‑68 (MQ=255) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:10267689/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:17008167/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:23798879/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:32406583/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:14560001/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgc > 1:10719064/1‑67 (MQ=35) gtggCGTCAAAATCGCCGAGCCGTTCCCTGAAGCCCCGGGCAGCCCACATGCATCTGTGATGACGgc > 1:17418369/1‑67 (MQ=11) gctctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGgc < 1:4792269‑M1/4‑1 (MQ=255) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:35163230/1‑68 (MQ=35) tggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc > 1:7976056/1‑68 (MQ=35) tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGcgcg < 1:3900926‑M1/7‑1 (MQ=255) tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGcgcg > 1:5268687‑M1/62‑68 (MQ=255) tctggcgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGcgcg < 1:28915026‑M1/7‑1 (MQ=255) ggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGgcgc < 1:20208979/67‑1 (MQ=35) ggCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGcgcg < 1:25711035/68‑1 (MQ=35) gCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt > 1:2692168/1‑68 (MQ=35) gcgggcgcgaggtaacatccctgtaaaccgcgccctcagcccacatccATGTGGGCTGAGGGCGCGt < 1:3545221‑M2/19‑1 (MQ=255) cGTCAAACTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt < 1:31591095/67‑1 (MQ=25) cGTCAAAATCGCCGTGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGGGGGCTGAGGGCGCGt < 1:33040400/67‑1 (MQ=255) cGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGt < 1:20764788/67‑1 (MQ=35) gTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtt < 1:33228186/67‑1 (MQ=35) gggcgcgaggtaacatccctgtaaaacgcgcccgcagcccacatccATGTGGGCTGAGGGCGCGtttt < 1:15979941‑M2/22‑1 (MQ=255) cgaacaaaatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGCGCGtttt > 1:25061855‑M1/57‑67 (MQ=255) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:35847636/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:628008/67‑1 (MQ=35) cAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGtttt < 1:22282035/67‑1 (MQ=35) aaaaTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTAc < 1:26454442/68‑1 (MQ=35) aTCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAgg < 1:24687527/68‑1 (MQ=35) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:18618966/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg > 1:23085018/1‑68 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:1148422/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAggg < 1:36894003/68‑1 (MQ=33) tCGCCGAGGCGTTCCCTGAACGCCGGGGCAGCCCACATGGATGGGGGCTGAGGGCGCGTTTTACAggg < 1:18883713/68‑1 (MQ=11) gaggtaacatcccacaaaaacgcgccctcagcccacatccATGTGGGCTGAGGGCGCGTTTTACAgg < 1:20052164‑M2/27‑1 (MQ=255) cGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGa < 1:20466737/68‑1 (MQ=31) cGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGa < 1:12246956/68‑1 (MQ=31) aatcgccgctgcgcggtgccctcgacttatcccttacggctaccgggtcGGGCGCGTTTTACAGGGAt > 1:7820496‑M1/50‑68 (MQ=255) ggggTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTa > 1:21649506/4‑67 (MQ=1) acttGGATGTGGGCTGAGGGCGCGTTTTACTGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAgg < 1:34743975/65‑1 (MQ=0) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGa < 1:2809945‑M2/64‑1 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATaa < 1:27153177‑M2/67‑1 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATaa > 1:28437796‑M2/1‑67 (MQ=255) ATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATaa > 1:19900652‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATTTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:19531793‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:29526869‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:14911126‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:15693102‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:26776795‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:30352647‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:33444203‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:26028981‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:16283112‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:34095257‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:16473924‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:22572595‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:22185210‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg < 1:21169685‑M2/67‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:7595353‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAg > 1:773160‑M2/1‑67 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:12664518‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:9801923‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:28791825‑M2/68‑1 (MQ=255) TGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:21353079‑M2/68‑1 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:21725153‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:27391423‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:22818763‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:12899622‑M2/1‑68 (MQ=255) GTGGGCTGAGGGCGCGTTTTACAAGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTc > 1:9256688‑M2/1‑68 (MQ=255) TGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGt < 1:24320478‑M2/66‑1 (MQ=255) GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCg < 1:13560765‑M2/67‑1 (MQ=255) GGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGa < 1:19732706‑M2/68‑1 (MQ=255) GGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAg > 1:4953251‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGCgg > 1:14453106‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:3945423‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:15484545‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:5975844‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:7072236‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:19315354‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:9607113‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:18931784‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:1248416‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:36226842‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:13085976‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:34923672‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:10040965‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:25527799‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:1428094‑M2/1‑68 (MQ=255) GCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:30459833‑M2/1‑68 (MQ=255) CTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAgg > 1:6573702‑M2/1‑67 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc > 1:11012422‑M2/1‑68 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc < 1:17980798‑M2/68‑1 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc < 1:18245068‑M2/68‑1 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc < 1:26315985‑M2/68‑1 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc < 1:10449322‑M2/68‑1 (MQ=255) TGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc < 1:15267678‑M2/68‑1 (MQ=255) GAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGc > 1:21954015‑M2/1‑67 (MQ=255) GGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCAcc < 1:29290085‑M1/68‑1 (MQ=255) | TGGTGGCGTCAAAATCGCCGAGGCGTTCCCTGAAGGCCGGGGCAGCCCACATGGATGTGGGCTGAGGGCGCGTTTTACAGGGATGTTACCTCGCGCCCGACCCGGTAGCCGTAAGGGATAAGTCGAGGGCACC > CP009273/910484‑910616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |