| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1264549 = | NA (NA) | 10 (0.030) | 5/94 | NT | NA | intergenic (+74/+75) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small |
| ? | CP009273 | 1264575 = | NA (NA) | intergenic (+100/+49) | kdsA/ldrA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase/toxic polypeptide, small | |||||
Only 100 of 928 total aligned reads displayed.
TTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG > CP009273/1264482‑1264615 | gtttGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGc < 1:23166943/66‑1 (MQ=255) gCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAgg > 1:30016899/1‑67 (MQ=255) gCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAgg > 1:24171630/1‑67 (MQ=255) gCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGc < 1:19315821/68‑1 (MQ=255) ttGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑g < 1:22539820/68‑1 (MQ=255) tGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑Gc < 1:7995803/68‑1 (MQ=255) aaaaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAgg < 1:12187276/68‑1 (MQ=255) aaaaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAgg < 1:26969269/68‑1 (MQ=255) aaataaatCATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGc < 1:34623704/68‑1 (MQ=255) aaaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGc < 1:31199387/68‑1 (MQ=255) aaaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGc < 1:33324077/68‑1 (MQ=255) aaaTAAAGTATTAGCGTTCTCCGTTAAGACTTTTTTCTTGGGTGCCGGATACAAAAAAGGCC‑GGAGGc < 1:3159911/68‑1 (MQ=255) aaTTAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt < 1:30963263/68‑1 (MQ=255) aaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt < 1:29138591/68‑1 (MQ=255) aaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt < 1:1845292/68‑1 (MQ=255) aaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt < 1:27435315/68‑1 (MQ=255) aaTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt < 1:8858266/68‑1 (MQ=255) aTAAATTATTCTCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GAAGGCTg < 1:4073118/68‑1 (MQ=255) aTAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGAGCCGGATACAAAAAAGGCC‑GCAGGCTg < 1:25733513/68‑1 (MQ=255) aaaGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGtt > 1:1756418/1‑68 (MQ=255) aaaGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGtt > 1:11757486/1‑68 (MQ=255) aaaGTATTAGCGGTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGtt < 1:8508429/68‑1 (MQ=255) aaGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGtt > 1:34995418/1‑67 (MQ=255) aGTATTAGCGTTCTGCGTTAAGAGTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTa > 1:24501970/1‑67 (MQ=255) aTTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTAcccc < 1:24661102/68‑1 (MQ=255) aTTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTAcccc < 1:11370235/68‑1 (MQ=255) aTTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCAGGATACAAAAAAGGCC‑GCAGGCTGTTAca > 1:2832099/1‑65 (MQ=255) ttAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTAcc > 1:21673367/1‑65 (MQ=255) aGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGc > 1:7381059/1‑68 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:33009187/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:28674611/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:2516848/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:25952515/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:23949626/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:18758130/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:17197328/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:35779549/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:15264636/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:5757247/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:13051786/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:7717767/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:9364705/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:1029496/1‑67 (MQ=255) cGTTCTGCGTTAAGACTTTTTTCATGGGTGACGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCg > 1:6280919/1‑67 (MQ=255) gTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCgg < 1:2039056/67‑1 (MQ=255) gTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCgg < 1:6798948/67‑1 (MQ=255) ttCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGcc > 1:961943/1‑68 (MQ=255) ttCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGcc > 1:36792260/1‑68 (MQ=255) ttCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGcc > 1:14828884/1‑68 (MQ=255) tCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGcct < 1:25615322/68‑2 (MQ=255) tCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGcc < 1:13900595/67‑1 (MQ=255) tCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCg > 1:33832620/1‑68 (MQ=255) tGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGt < 1:10047101/68‑1 (MQ=255) tGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGt < 1:481977/68‑1 (MQ=255) tGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGt > 1:19681072/1‑68 (MQ=255) gTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTc > 1:16355187/1‑68 (MQ=255) gACTTTTTTCATGGGTGCCGGGTTGAAAAAAGGCCGGCGGGGTTTCACCCCGGGGGCGGGTTTTggt > 1:29465634/1‑66 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCt > 1:18009632/1‑42 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgc > 1:4545260/1‑67 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgc > 1:3799576/1‑67 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgc > 1:34203965/1‑67 (MQ=255) gACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgc > 1:14091964/1‑67 (MQ=255) aCTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcgc > 1:27962702/1‑68 (MQ=255) cTTTTTTCATGGTTGCCGGATACAAAAAACGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGgcg < 1:6657829/66‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACGCCTGCGGCCGGTTTCGGGCGCa < 1:17813473/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:36284793/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:22761029/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:34334987/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:35979254/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:26526855/68‑1 (MQ=255) cTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCa < 1:22002349/68‑1 (MQ=255) ttttCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCatat > 1:12406103/1‑68 (MQ=255) tttCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt < 1:15593953/68‑1 (MQ=255) ttCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt > 1:19995589/1‑67 (MQ=255) ttCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt > 1:27063227/1‑67 (MQ=255) ttCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATAtt > 1:15974308/1‑67 (MQ=255) cATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGcc > 1:6050302/1‑68 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:3542729/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:9063881/68‑1 (MQ=255) aTGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCa < 1:23509902/68‑1 (MQ=255) tGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGCGCGCATATTGCCa > 1:21329657/1‑67 (MQ=255) ggggGCCGCATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc < 1:32274702/68‑1 (MQ=255) ggTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:24825687/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:11094977/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:14517972/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:33149831/1‑67 (MQ=255) ggTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATc > 1:21002204/1‑67 (MQ=255) tGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCAc < 1:12805587/67‑1 (MQ=255) gCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACg < 1:1689950/67‑1 (MQ=255) gATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:32097310/1‑67 (MQ=40) caTACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc < 1:13439378/67‑1 (MQ=39) aTACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:5483628/1‑66 (MQ=39) aTACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAg > 1:32638019/1‑66 (MQ=39) aTACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGc < 1:10800693/67‑1 (MQ=39) tACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCggg < 1:11969237/44‑1 (MQ=40) aCAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTg > 1:20702781/1‑68 (MQ=35) aaaGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:513429/1‑67 (MQ=35) aaaGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:14378594/1‑67 (MQ=35) aaaGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGc > 1:29621090/1‑67 (MQ=35) aaaGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGCCCGCCTGCCGc > 1:30337745/1‑67 (MQ=11) | TTGCTTGAAAAATAAAGTATTAGCGTTCTGCGTTAAGACTTTTTTCATGGGTGCCGGATACAAAAAAGGCC‑GCAGGCTGTTACCCCTGCGGCCGGTTTCGGGCGCATATTGCCATCACGGCAGCCTGACGCCCG > CP009273/1264482‑1264615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |