New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =160 (0.360)14 (0.040) 8/88 NT 10.0% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 321 total aligned reads displayed.

CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA  >  CP009273/1685560‑1685694
                                                                   |                                                                   
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:30742‑M1/1‑1 (MQ=255)
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:34942170‑M1/1‑1 (MQ=255)
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:14676047‑M1/1‑1 (MQ=255)
gtgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatga                                                                     <  1:5543611‑M1/1‑1 (MQ=255)
cATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCA                                                                     >  1:10901698‑M1/1‑68 (MQ=255)
 tgttgcaggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgaa                                                                    <  1:15281347‑M1/2‑1 (MQ=255)
    tgcaggaaaaggtcggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAAc                                                                 >  1:7656027‑M1/64‑68 (MQ=255)
      tGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACG                                                                >  1:6553467‑M1/1‑67 (MQ=255)
       aggaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGcc                                                              <  1:19324276‑M1/8‑1 (MQ=255)
         gaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg                                                            <  1:10021388‑M1/10‑1 (MQ=255)
         gaaaaggtaggcctgataagcgtagcgcatcaggcaatctctggtttgttttcagatgAAAACGCCgg                                                            <  1:29246504‑M1/10‑1 (MQ=255)
         gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGG                                                            >  1:13330801‑M1/1‑68 (MQ=255)
         gATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGG                                                            >  1:21322750‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:14375892‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:27311458‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:24402075‑M1/1‑68 (MQ=255)
          aTGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGA                                                           >  1:9638100‑M1/1‑68 (MQ=255)
              gaGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                        <  1:26230575/66‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTCCCGGCAATTCCGCAGCAGTAATTCACGGCCAAACCGCCGGAGaa                                                        <  1:26908017/67‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                        <  1:23103742/67‑1 (MQ=255)
              cAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGaa                                                        <  1:33657759/67‑1 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAttt                                                     <  1:36045395/66‑1 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAtt                                                      <  1:23326032/65‑1 (MQ=255)
                  tctTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAAtt                                                      <  1:34003110/65‑1 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:33284414‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:13178746‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:33797363‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              >  1:20811394‑M2/1‑64 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:881980‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:35481627‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:5231883‑M2/68‑5 (MQ=255)
                       aCGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActcc                                              <  1:17391273‑M2/68‑5 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:6222640‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:19536733‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:34530222‑M2/68‑6 (MQ=255)
                        cGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccg                                             <  1:15442829‑M2/68‑6 (MQ=255)
                         gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                            >  1:29512502‑M2/1‑62 (MQ=255)
                         gTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                            >  1:10495806‑M2/1‑62 (MQ=255)
                         gTTCCGGCGGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccgg                                            >  1:22978936‑M2/1‑62 (MQ=255)
                              ggCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                       <  1:19014710‑M2/68‑12 (MQ=255)
                               gCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttt                                       <  1:7047969‑M2/67‑12 (MQ=255)
                                cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                     >  1:12194925/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCCCTCCGGCGTTTTCa                                    >  1:20759867/1‑68 (MQ=255)
                                 tGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                    <  1:16364343/68‑1 (MQ=255)
                                    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCa                                    >  1:20387422/1‑65 (MQ=255)
                                     ccGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTg                                >  1:21924070/1‑68 (MQ=255)
                                        aggcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:29372442‑M1/41‑1 (MQ=255)
                                         cAATTCCGCATCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:11948863/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:28982939/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:15569160/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:32692381/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:36804138/67‑1 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             >  1:17161411/1‑67 (MQ=255)
                                         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                             <  1:18897904/67‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACTGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:10460096/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:7370891/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:17895379/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:17613413/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        <  1:5394400/68‑1 (MQ=255)
                                             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaa                         >  1:25770011/1‑67 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaac                       <  1:4879719/68‑1 (MQ=255)
                                              ccGCAGCAGTAATTCACGGCCAAAACGCCGAAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                        >  1:25564491/1‑67 (MQ=255)
                                               cGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAAcc                      <  1:28180966/68‑1 (MQ=255)
                                                tctggtttgttttcagatgAAATCGCCGGAGAATTTTCCCTCCGGCGTTTTCATCTGTAAACAAACCa                     <  1:10721436‑M1/49‑1 (MQ=255)
                                                gcagcaGTAATTCACGGCCAAAACGCCGGAGAATTTTCActccggcgttttggccgtgaattactgct                     >  1:8084104‑M2/1‑39 (MQ=255)
                                                  agcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   >  1:4309298/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  >  1:19036426/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  >  1:36532139/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  >  1:11780471/1‑68 (MQ=255)
                                                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  >  1:30435338/1‑68 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGTGAATTTTCACTCCGGCGTGTTCATCTGAAAACAAACCAGAGAt                <  1:23702276‑M1/54‑1 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                <  1:35303644‑M1/54‑1 (MQ=255)
                                                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                <  1:21593294‑M1/54‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                  <  1:32767641/66‑1 (MQ=255)
                                                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                   <  1:31345890/65‑1 (MQ=255)
                                                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                <  1:32146623/65‑1 (MQ=255)
                                                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc             <  1:22483031/68‑1 (MQ=255)
                                                         aTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGcc            <  1:22306442/68‑1 (MQ=255)
                                                          ttCACGGCCAAAACGCGGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:3817338/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:18520984/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:3622768/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:24178603/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:30898872/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:6751494/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:146231/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg              >  1:21056618/1‑65 (MQ=255)
                                                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt           <  1:26567691/68‑1 (MQ=255)
                                                          gtCACGGCCAAAACGCCGGAGAATGTTCACTCCGGCGTTGTCATCTGAAAACAAACCAGAGATTg              >  1:5047173/2‑65 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg          >  1:1170296/1‑68 (MQ=255)
                                                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg          >  1:2588756/1‑68 (MQ=255)
                                                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt        >  1:16558975/1‑68 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:14851872/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:12557563/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:3178246/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:37016641/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:1159947/68‑1 (MQ=255)
                                                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:18332879/68‑1 (MQ=255)
                                                               gatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      <  1:24600000‑M1/64‑1 (MQ=255)
                                                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg     <  1:13007393/67‑1 (MQ=255)
                                                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc      >  1:32916807/1‑66 (MQ=255)
                                                                   |                                                                   
CATGTTTGCGATGCCAGCTCTTAACGTTCCGGCTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTA  >  CP009273/1685560‑1685694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.