New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 1685627 =160 (0.360)14 (0.040) 8/88 NT 10.0% intergenic (+10/+216) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein
?CP009273 1685659 = NA (NA)intergenic (+42/+184) ydgA/uidC DUF945 family protein/putative outer membrane porin for beta‑glucuronides porin protein

Only 100 of 341 total aligned reads displayed.

CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726
                                                                   |                                                                   
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:19025674/1‑68 (MQ=255)
cTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTc                                                                     >  1:2217326/1‑68 (MQ=255)
   gcatcaggcaatctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATc                                                                  <  1:1465581‑M2/4‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:15305593/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:33989590/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:27713163/67‑1 (MQ=255)
    aCCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATc                                                                  <  1:25691105/67‑1 (MQ=255)
       ggCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaa                                                              <  1:28968269/68‑1 (MQ=255)
        aggcaatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCAGTCCGGCGTTTTCATCTgaac                                                             <  1:17490394‑M1/41‑2 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:33149592/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             <  1:18897904/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:6332856/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:2153182/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             <  1:6746607/67‑1 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:36173430/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGaaa                                                             >  1:32119461/1‑67 (MQ=255)
         cAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTAACTCCGGCGTTTTAATCTGaaa                                                             >  1:19324436/1‑67 (MQ=255)
          aaTTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCCCTCCGGCGTTTTCATCTGAaaac                                                           >  1:22310425/1‑68 (MQ=255)
           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaac                                                           <  1:27215767‑M1/43‑1 (MQ=255)
           caatctctggtttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTGTTCATCTGAaaaca                                                          <  1:2099761‑M1/44‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:29662631/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:7370891/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:17613413/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:17895379/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:5394400/68‑1 (MQ=255)
             tCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAaaacaaa                                                        <  1:23533447/68‑1 (MQ=255)
             atctctggtttgttttcagatgaacacgccggagtgaaaattcaccggcgttttCATCTGAaaacaaa                                                        <  1:23702276‑M2/14‑1 (MQ=255)
               ctctggtttgttttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAAcc                                                      <  1:36725928‑M2/16‑1 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:35684070/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCagag                                                  >  1:14451294/1‑68 (MQ=255)
                   gcagTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGCCGTTTTCATCTGAAAACAAACCagag                                                  >  1:17242946/1‑68 (MQ=255)
                     tttgttttcagatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                <  1:35303644‑M1/54‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCCCTCCGGCGTTTTCATCTGAAAACAAACCAGAGAt                                                >  1:21684260/1‑68 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:10552524/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:23142358/65‑1 (MQ=255)
                     agTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCaga                                                   <  1:15159137/65‑1 (MQ=255)
                       tgttttcagatgaaaacgccgcagtgaacaatctccggcgttttCATCTGAAAACAAACCAGAGATTg                                              <  1:32702211‑M2/24‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              <  1:13183606/67‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc                                             <  1:20774621/68‑1 (MQ=255)
                        aaTTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGc                                             <  1:22483031/68‑1 (MQ=255)
                          tttcagatgaaaacgccggagtgaaaattctccggcgttttCATCTGAAAACAAACCAGAGATTGCCt                                           <  1:29372442‑M2/27‑1 (MQ=255)
                          ttCACGGCCAAAACGCGGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:3817338/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACACACCAGAGATTg                                              >  1:34835806/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTg                                              >  1:18520984/1‑65 (MQ=255)
                          ttCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCt                                           <  1:26567691/68‑1 (MQ=255)
                          gtCACGGCCAAAACGCCGGAGAATGTTCACTCCGGCGTTGTCATCTGAAAACAAACCAGAGATTg                                              >  1:5047173/2‑65 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:21175530/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:1170296/1‑68 (MQ=255)
                           tCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTg                                          >  1:2588756/1‑68 (MQ=255)
                            cACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGa                                         <  1:31055973/68‑1 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:7031466/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:7631291/1‑68 (MQ=255)
                             aCGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGAt                                        >  1:19212945/1‑68 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:36484819/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:3178246/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:1650952/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:18332879/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:37016641/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:14705691/68‑1 (MQ=255)
                               ggCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:12557563/68‑1 (MQ=255)
                               gatgAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgc                                      <  1:24600000‑M1/64‑1 (MQ=255)
                                 ccAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcg                                     <  1:13007393/67‑1 (MQ=255)
                                  cAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATgcgc                                    <  1:8180462/67‑1 (MQ=255)
                                    AAACGCCGGATAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:12161912‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:15628116‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:16825813‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:1122283‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:5163164‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:24027074‑M1/1‑68 (MQ=255)
                                    AAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 >  1:22073991‑M1/1‑68 (MQ=255)
                                      ACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTAc                                 <  1:28452389‑M1/66‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              <  1:24873594‑M1/68‑1 (MQ=255)
                                       CGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCt                              >  1:15005962‑M1/1‑68 (MQ=255)
                                        GCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCtt                             >  1:29925502‑M1/1‑68 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:4148522‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:7949732‑M1/1‑67 (MQ=255)
                                          CGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTa                            >  1:30339668‑M1/1‑67 (MQ=255)
                                           GGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATc                          <  1:3050125‑M1/68‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:10578687/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       >  1:9239627/1‑66 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:36829002/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:13546630/66‑1 (MQ=255)
                                                aTTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAgg                       <  1:19897866/66‑1 (MQ=255)
                                                  tttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTa                   <  1:30773019/68‑1 (MQ=255)
                                                   ttCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATGAGGCCtt                   >  1:11638215/1‑66 (MQ=255)
                                                    tCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTAcc                 <  1:5569061/68‑1 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:4960018/1‑68 (MQ=255)
                                                     cACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCt                >  1:29303744/1‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:32665166‑M2/13‑68 (MQ=255)
                                                       ctccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCttt              >  1:26150124‑M2/13‑68 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc            <  1:4478578‑M2/58‑1 (MQ=255)
                                                         ccggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTc            <  1:10021388‑M2/58‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:17130894‑M2/60‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:1082821‑M2/60‑1 (MQ=255)
                                                           ggcgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCt          <  1:33426098‑M2/60‑1 (MQ=255)
                                                             cgttttCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGc        >  1:22898401‑M2/7‑68 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:33607706‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAacac   <  1:11933744‑M2/67‑1 (MQ=255)
                                                                  tCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCATATCAGGCCTACCTTTTCCTGCAac     >  1:1229693‑M2/2‑66 (MQ=255)
                                                                   cATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACt  >  1:9559024/1‑68 (MQ=255)
                                                                   |                                                                   
CTGTACCGGCAATTCCGCAGCAGTAATTCACGGCCAAAACGCCGGAGAATTTTCACTCCGGCGTTTTCATCTGAAAACAAACCAGAGATTGCCTGATGCGCTACGCTTATCAGGCCTACCTTTTCCTGCAACACT  >  CP009273/1685592‑1685726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.