| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1958516 = | 325 (0.730) | 21 (0.060) | 8/96 | NT | 7.6% | coding (792/2079 nt) | flhA | putative flagellar export pore protein |
| ? | CP009273 | 1958598 = | 229 (0.600) | coding (710/2079 nt) | flhA | putative flagellar export pore protein | |||||
Only 100 of 515 total aligned reads displayed.
TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 | tcatggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:10801450‑M1/1‑1 (MQ=255)tGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCC > 1:25578267‑M1/1‑68 (MQ=255) catggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacac < 1:26405562‑M1/1‑1 (MQ=255) atggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgc < 1:31935560‑M1/3‑1 (MQ=255) atggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgc < 1:32660791‑M1/3‑1 (MQ=255) aaaaGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGC > 1:23901809‑M1/1‑68 (MQ=255) ggtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacacgcg < 1:17046535‑M1/4‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:2202906‑M1/6‑1 (MQ=255) gtcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc < 1:8436822‑M1/6‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggcg < 1:13052561‑M1/7‑1 (MQ=255) tcattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCgcggc > 1:22807293‑M1/62‑67 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:21671218‑M1/1‑68 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:7369521‑M1/1‑68 (MQ=255) gCTGATTCACCATCTGCTCGCCAACATCCTGAACGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:11225986‑M1/1‑68 (MQ=255) gCTGATTCACCATCTGCTCACCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCG > 1:33300500‑M1/1‑68 (MQ=255) cattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCGcggcgg < 1:22546441‑M1/8‑1 (MQ=255) cattaacattgtcggcgggttgctggtcggcgtgctgcaacatggcatgagcatgggacaCGcggcgg < 1:14081780‑M1/8‑1 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGt < 1:20301586/68‑1 (MQ=255) tGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGG < 1:8118846‑M1/67‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:28087739/68‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:14446050/68‑1 (MQ=255) ttCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGa < 1:117513/68‑1 (MQ=255) cATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATc > 1:19420919/1‑67 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:32938881/1‑68 (MQ=255) tCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCAcc > 1:9378442/1‑68 (MQ=255) tGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCa > 1:28655540/1‑67 (MQ=255) ccAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCgg > 1:10088991/1‑68 (MQ=255) aTCCTGATCTGTTCGGACACGAGTAACGATGACCCCAGCGGCGGGAGAAATCACCAGCGCCGGAAttt < 1:17370612/68‑1 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:24701932/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:32470306/1‑68 (MQ=255) ccTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTtgt > 1:636178/1‑68 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:13236950/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:16284647/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:30704361/68‑1 (MQ=255) gATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc < 1:30578550/68‑1 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:4715130/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:15328538/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:6919192/1‑67 (MQ=255) aTCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcc > 1:29793388/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:1993534/67‑1 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca > 1:35206388/1‑67 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:27224777/67‑1 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:25340455/67‑1 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:18840709/67‑1 (MQ=255) tCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGcca < 1:32176220/67‑1 (MQ=255) cGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGccacc > 1:29286907/1‑68 (MQ=255) cGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGacacc > 1:9186093/1‑68 (MQ=255) gCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGa > 1:13797254/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:12704168/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:31118745/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:31436203/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:12305787/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:6068946/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:35440527/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:15475529/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:15915790/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:36596662/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7563178/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:7214838/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:4415504/1‑67 (MQ=255) cacGCGTAACGATGACCCCCGCGGCGATAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc > 1:237274/1‑67 (MQ=255) cacGCGTAACGATGACACCCGCGGCGGaaagttatacgctattgaccattggcgacggtctggtggc > 1:4143109‑M1/1‑27 (MQ=255) atggcatgagcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTc < 1:23146507‑M1/48‑1 (MQ=255) gTAACGATGACGCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCCAt < 1:36055166/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:33576138/68‑1 (MQ=255) gTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAAt < 1:9589140/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:37084733/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg > 1:27509155/1‑68 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:19666343/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:23298025/68‑1 (MQ=255) aaCGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:24194017/68‑1 (MQ=255) agcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATgg < 1:34438939‑M1/56‑1 (MQ=255) gcatgggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTc < 1:34054159‑M1/58‑1 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTCGCCAATGGTCa > 1:26806369/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:20942052/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:21165494/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:15686843/1‑68 (MQ=255) gATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCa > 1:16783101/1‑68 (MQ=255) catgggacaCGCGGCGGTAGAAATCCCCAGCGCCGGAATTTGTGCCCCCAGACCGGCGCCAATGGTCa < 1:20582102‑M1/59‑1 (MQ=255) aTGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCaa > 1:12136553/1‑68 (MQ=255) ggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATa < 1:17592585‑M1/62‑1 (MQ=255) ggacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATa < 1:14907200‑M1/62‑1 (MQ=255) gacaCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGCCCGTCGCCAATGGTCAATAGc < 1:10567201‑M1/64‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAg < 1:8827866/67‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:17866104/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:4574424/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:15225561/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:18288665/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:503224/68‑1 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:3494092/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:28838380/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc > 1:29600464/1‑68 (MQ=255) cccccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGc < 1:30171524/68‑1 (MQ=255) acaCGCGGCGGTAGAAATCACCCGCGCCGGGATTTGTGGCACCAGCCCCTCGCCAATGGTCAATAGCg < 1:28319107‑M1/65‑1 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt > 1:5503499/1‑68 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt > 1:24474731/1‑68 (MQ=255) cccGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGt < 1:34705773/68‑1 (MQ=255) cgcgGCGGaaagttatacgctattgaccattggcgacggtctggtggcacaaattccggcgctggtga < 1:31658262‑M1/68‑61 (MQ=255) cgcgGCGGaaagttatacgctattgaccattggcgacggtctggtggcacaaattccggcgctggtga < 1:35845418‑M1/68‑61 (MQ=255) cgcgGCGGaaagttatacgctattgaccattggcgacggtctggtggcacaaattccggcgctggtga < 1:27860971‑M1/68‑61 (MQ=255) | TGAAAAGCTGATTCACCATCTGCTCGCCAACATCCTGATCGGTGCTGACACGCGTAACGATGACCCCCGCGGCGGTAGAAATCACCAGCGCCGGAATTTGTGCCACCAGACCGTCGCCAATGGTCAATAGCGTAT > CP009273/1958449‑1958583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |