| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1995529 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4607941 = | NA (NA) | noncoding (8/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 567 total aligned reads displayed.
ACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACC > CP009273/1995465‑1995596 | cGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc < 1:1048318/68‑1 (MQ=255) cGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagc < 1:21004448/68‑1 (MQ=255) ccTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:4616961/1‑68 (MQ=255) ccTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc > 1:9338951/1‑68 (MQ=255) cTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgc < 1:21305276/67‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:5610120/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:12401251/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:20037407/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:859222/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:24285708/68‑1 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc > 1:16787637/1‑68 (MQ=255) tCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc < 1:36478164/68‑1 (MQ=255) ccGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATgcgctgggcgtt > 1:13741554‑M1/1‑56 (MQ=255) ccGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAgcgcagcgca > 1:512779/1‑68 (MQ=255) gCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa > 1:36190117/1‑68 (MQ=255) ccTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCa < 1:33779271/67‑1 (MQ=255) aCAAAAATGTGCAAATTCAATAAATTGCAATTCCACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa < 1:11141742/68‑1 (MQ=255) aCAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa < 1:8875608/68‑1 (MQ=255) aCAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa < 1:35098739/68‑1 (MQ=255) aCAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa < 1:829866/68‑1 (MQ=255) cAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaa < 1:2410196/68‑1 (MQ=255) cAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaa < 1:25614704/68‑1 (MQ=255) cAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCaa < 1:6677194/68‑1 (MQ=255) aaaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAt > 1:33001312/1‑68 (MQ=255) aaaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAt > 1:14371541/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:23439193/1‑68 (MQ=255) aaaaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtt > 1:11749087/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:1861973/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:33476595/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:29308350/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:10210375/1‑68 (MQ=255) aaTGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTg > 1:13908246/1‑68 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc < 1:12756406/68‑1 (MQ=255) tgtgCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGc > 1:35423679/1‑68 (MQ=255) gCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGt < 1:19340560/67‑1 (MQ=255) cAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCggt > 1:26989890/1‑65 (MQ=255) cAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGtt > 1:20247956/1‑67 (MQ=255) aTTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCg < 1:24525153/68‑1 (MQ=255) cAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCa < 1:22947891/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:22227207/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:14708531/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:29594817/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:12178272/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:7700210/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:26729633/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:34478736/68‑1 (MQ=255) aTAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGt < 1:33997093/68‑1 (MQ=255) tAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAg > 1:3027829/1‑66 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:15984122/68‑1 (MQ=255) aTTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCa < 1:13094227/68‑1 (MQ=255) ttGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCTATTTGGCGTTGCCGTCAGTCTCAg > 1:11321633/1‑68 (MQ=255) ttGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAg > 1:5954842/1‑68 (MQ=255) tGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGt < 1:3940260/68‑1 (MQ=255) aaTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTaa < 1:2587696/68‑1 (MQ=255) aaTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTaa > 1:4389590/1‑68 (MQ=255) aTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTaa > 1:17924273/1‑67 (MQ=255) cAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAg < 1:31293495/68‑1 (MQ=255) aaCTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAgg < 1:31109859/68‑1 (MQ=255) gTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACa < 1:35709843/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:28292995/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:21824306/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:29923707/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:31453664/68‑1 (MQ=255) aGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAc < 1:15258095/68‑1 (MQ=255) ggCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg > 1:32369697/1‑68 (MQ=255) ggCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg > 1:9737540/1‑68 (MQ=255) ggCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg > 1:17692484/1‑68 (MQ=255) gCCTGATgcgctgcgcttatcaggcctacgagacgtatctccgcgtaggccggataaggcgtagacgc < 1:34267348‑M1/68‑62 (MQ=255) gCCTGATgcgctgcgcttatcaggcctacgagacgtatctacccgtaggccggataaggcgtagacgc > 1:15693397‑M1/1‑7 (MQ=255) gCCTGATgcgctgcgcttatcaggcctacgagacgtatctacccgtaggccggataaggcgtagacgc > 1:23157730‑M1/1‑7 (MQ=255) gCCTGATgcgctgcgcttatcaggcctacgagacgtatctacccctaggccgcataacgcgaagacgc > 1:18144914‑M1/1‑7 (MQ=255) gCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa > 1:7310193/1‑68 (MQ=255) ccTGATgcgctgcgcttatcaggcctacgagacgtatctacccgtaggccggataaggcgtagacgca > 1:751127‑M1/1‑6 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACCACGAt > 1:17547026/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg < 1:31690966/66‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:26145669/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:30721900/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:16431767/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGa < 1:21701435/67‑1 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:25453486/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:29048037/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:32799085/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:27529350/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:6799016/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:19608869/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:497852/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAt > 1:247063/1‑68 (MQ=255) ccTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAAAGAt > 1:2790373/1‑68 (MQ=255) cTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGAtt > 1:802666/1‑68 (MQ=255) tgcgctgcgcttatcaggcctacgagacgtatctacccgtaggcgggataaggcgtagccgcatccg > 1:17172523‑M1/1‑1 (MQ=255) tgcgctgcgcttatcaggcctacgagacgtatctacccgtaggccggataaggcgtagacgcatccgg < 1:16224769‑M1/68‑68 (MQ=255) tgcgctgcgcttatcaggcctacgagacgtatctacccgtaggccggataaggcgtagacgcatccg > 1:18991198‑M1/1‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:27219187/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:22611552/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:26380206/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAcc < 1:25252929/68‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:20559179/1‑67 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc < 1:21558274/67‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc < 1:25078546/67‑1 (MQ=255) tAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAc > 1:9592042/1‑67 (MQ=255) | ACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACC > CP009273/1995465‑1995596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |