| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1995529 | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (81/99 nt) | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4607941 = | NA (NA) | noncoding (8/82 nt) | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP353 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
Only 100 of 648 total aligned reads displayed.
AAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGC > CP009273/4607875‑4608008 | aaaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgc > 1:21306631/1‑68 (MQ=255) aaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgc < 1:12050122/67‑1 (MQ=255) aaGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgc < 1:33985489/67‑1 (MQ=255) gcgcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgc > 1:17245775/1‑65 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:26570268/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:16656497/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:22222413/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:21627111/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:31301058/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:3484458/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:12751802/68‑1 (MQ=255) gcTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc < 1:7462986/68‑1 (MQ=255) cTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGAtgcgctgc > 1:5936287/1‑67 (MQ=255) gTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCtt < 1:17818047/67‑1 (MQ=255) ccggcctacaaaaatgtgcaaattcaataaattgcaattcaacttgtaggcctgatgcgctgggcgtt > 1:13741554‑M2/57‑65 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa < 1:26821278/67‑1 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa < 1:32241519/67‑1 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa < 1:17026390/67‑1 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa > 1:25956326/1‑67 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa < 1:33785761/67‑1 (MQ=255) tCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTa < 1:8125143/67‑1 (MQ=255) aCGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCa > 1:17652647/1‑68 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAgg < 1:20239995/68‑1 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAgg < 1:28382469/68‑1 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAgg < 1:28768490/68‑1 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAg > 1:28956786/1‑67 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAg > 1:64425/1‑67 (MQ=255) ggCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAg > 1:9502475/1‑67 (MQ=255) gCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAgg > 1:10035726/1‑67 (MQ=255) cGACGGTAATAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGc < 1:33029173/67‑1 (MQ=255) cGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGc < 1:14359970/67‑1 (MQ=255) cGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGc < 1:29903620/67‑1 (MQ=255) cGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGc < 1:25333438/67‑1 (MQ=255) gACGGTAAGAGCGCCAGCAGCTTCTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCt < 1:30661460/68‑1 (MQ=255) gACGGTAAGAGCGCCAGCAGCTACTAAGTGAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGcc < 1:29353680/67‑1 (MQ=255) gACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGcc < 1:7179731/67‑1 (MQ=255) gACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCt > 1:31920784/1‑68 (MQ=255) gACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCt < 1:24164351/68‑1 (MQ=255) cGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTa < 1:37021238/67‑1 (MQ=255) ggTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACg > 1:7607258/1‑68 (MQ=255) aaGAGCTCCAGCATCTACTAAGTAATATGCTTTAAGCCTTATGCGCTGCGCTTATCAGGCCTACgata < 1:30887511/68‑3 (MQ=21) aaGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACgag < 1:35847259/67‑1 (MQ=255) aaGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACgag < 1:25737111/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACgga > 1:501145/1‑66 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGt < 1:15426840/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGt < 1:23111331/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGt < 1:5552262/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGt < 1:683581/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGt < 1:17417333/67‑1 (MQ=255) gcgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTa > 1:23850578/1‑68 (MQ=255) cgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTa > 1:27552375/1‑67 (MQ=255) cgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTa > 1:27946502/1‑67 (MQ=255) cgcCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTa > 1:15884213/1‑67 (MQ=255) cgcCAGCAGCTACTAAGTAAGATGCATGACGCCTGATGCGCTGCGATTATCAGGCCTACGAGACGTa > 1:34266625/1‑67 (MQ=37) cgcCAGCAGCTACTAACTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCAACGAGACgaa > 1:9223237/1‑65 (MQ=25) gccagcagCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCCGGCCTACGAGACGTATc < 1:30276689‑M2/60‑1 (MQ=255) gccagcagCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATc < 1:36211419‑M2/60‑1 (MQ=255) agCTACTAAGTACGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAcc < 1:14673281‑M2/64‑1 (MQ=255) agCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAccc < 1:36701403‑M2/65‑1 (MQ=255) agCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAcc < 1:23435259‑M2/64‑1 (MQ=255) agCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAcc < 1:10410937‑M2/64‑1 (MQ=255) agCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAcc < 1:3770712‑M2/64‑1 (MQ=255) agCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTAcc < 1:11087739‑M2/64‑1 (MQ=255) tactaAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTa < 1:18524711/67‑1 (MQ=255) tactaAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAg < 1:34399271/68‑1 (MQ=255) ctaAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGc < 1:19239586/68‑1 (MQ=255) taagtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGcc > 1:10771585/1‑68 (MQ=255) taagtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGcc < 1:16458545/68‑1 (MQ=255) taagtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGcc > 1:21119862/1‑68 (MQ=255) taagtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGcc > 1:21744470/1‑68 (MQ=255) aagtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCg < 1:30450980/68‑1 (MQ=255) agtaagATGGTTTACGCCTGATGCGCTGCTCTTATCAGGCCTACGAGACGTATCTACGCGTAGGCCgg < 1:35573174/68‑1 (MQ=25) agtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCgg < 1:433546/68‑1 (MQ=255) agtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCgg < 1:2194204/68‑1 (MQ=255) agtaagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCgg > 1:2327306/1‑68 (MQ=255) taagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGAt > 1:3506566/1‑68 (MQ=255) aagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATa > 1:24541637/1‑68 (MQ=255) aagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATa > 1:24642251/1‑68 (MQ=255) aagATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATa > 1:2957749/1‑68 (MQ=255) aTGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAg > 1:19733625/1‑67 (MQ=255) tGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAgg < 1:3268827/67‑1 (MQ=255) tGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAgg < 1:19437412/67‑1 (MQ=255) tGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAgg < 1:1140493/67‑1 (MQ=255) tGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAg < 1:33520918/66‑1 (MQ=255) tGCTTTACGCCTGAGGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAgg < 1:14975553/67‑1 (MQ=255) agCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAgg < 1:8901743/66‑1 (MQ=255) gCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGCGCCGTATCTCCCCGTAGGCCGGATAAGGCg > 1:27370797/1‑68 (MQ=25) gCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCg > 1:18948104/1‑68 (MQ=255) gCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCg > 1:13417042/1‑68 (MQ=255) gCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCg > 1:4564580/1‑68 (MQ=255) tttACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTa > 1:6689730/1‑68 (MQ=255) aCGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGAc > 1:20548301/1‑68 (MQ=255) gcctgatGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGc > 1:31651268‑M2/8‑68 (MQ=255) gcctgatGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCCTAGGCCGCATAACGCGAAGACGc > 1:18144914‑M2/8‑68 (MQ=255) cctgatGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCa > 1:26469272‑M2/7‑68 (MQ=255) cctgatGCGCTGCGCTTATCAGGCCTAAGAGACGTATCTACCCGTAGGCCGGATAAgg > 1:22686166‑M2/7‑58 (MQ=255) ctgatGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCa < 1:2696812‑M2/62‑1 (MQ=255) tGCGCTGCGCTTATCCGGCCTACGAGACGTATCTACCCGTAGGCCGGATCAGGCGTAGCCGCCTCCg > 1:4796411‑M2/2‑67 (MQ=255) tGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCgg < 1:24926161‑M2/67‑1 (MQ=255) gcgctgcgctTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGc > 1:16177038/1‑68 (MQ=255) | AAAGCGCTGGGTCACGGCGACGGTAAGAGCGCCAGCAGCTACTAAGTAAGATGCTTTACGCCTGATGCGCTGCGCTTATCAGGCCTACGAGACGTATCTACCCGTAGGCCGGATAAGGCGTAGACGCATCCGGC > CP009273/4607875‑4608008 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |