| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2542825 = | NA (NA) | 10 (0.030) | 6/98 | NT | NA | noncoding (1/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 3556967 = | NA (NA) | noncoding (26/98 nt) | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP256 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 833 total aligned reads displayed.
AGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAG > CP009273/2542758‑2542892 | tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:26627829‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:9602616‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:7287874‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:32098529‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:21574321‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:12765096‑M1/68‑68 (MQ=255)tgcgacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagg > 1:10980225‑M1/68‑68 (MQ=255) gacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGcc > 1:20915045‑M1/65‑67 (MQ=255) gacgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGcc > 1:4960579‑M1/65‑67 (MQ=255) cgTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCt < 1:8343600/67‑1 (MQ=255) aGTAATAAAAAGGCCAGTCAGAAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCt < 1:30284918/68‑1 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTg > 1:23646539‑M1/63‑67 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:26813519‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:18947038‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:16944090‑M1/63‑68 (MQ=255) cgtgaacgtcttatctggcctacaagaccatgcaaattcaatatattgcataaaccacgtagGCCTGa > 1:16696247‑M1/63‑68 (MQ=255) taaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATgc < 1:10312021/68‑1 (MQ=255) taaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATgc < 1:29947054/68‑1 (MQ=255) taaAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATgc < 1:3591843/68‑1 (MQ=255) aaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCt > 1:31653917/1‑68 (MQ=255) aaaGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCt > 1:32929225/1‑68 (MQ=255) aaaGGCCAGTCAGTAATGTTACTGCCTGGTCTGATACTCATGACAAACCCAAAACTACATCATGCGCt > 1:85398/1‑68 (MQ=12) aGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTAc < 1:30972332/68‑1 (MQ=255) aGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTAc < 1:2534688/68‑1 (MQ=255) ccAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACg < 1:647863/66‑1 (MQ=255) ctggcctacaagaccatgcaaattcaatatattgcattaaccccgtagGCCTGATGCGCTACGCTTa < 1:22230813‑M1/19‑1 (MQ=255) cagtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTa < 1:35407893/65‑1 (MQ=255) cagtAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTa < 1:17373671/65‑1 (MQ=255) cagtAATGTTACTGGCTGGTCTGAGAGGGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTa < 1:13412993/65‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:7682854/66‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg > 1:15171151/1‑66 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:17679119/66‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:23192144/66‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:21017670/66‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAg < 1:14238332/65‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGcc < 1:34723952/68‑1 (MQ=255) aaTGTTACTGGCTGGTCTGAGACTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg < 1:16335119/66‑1 (MQ=255) aTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt > 1:31216017/1‑68 (MQ=255) aTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt > 1:3570221/1‑68 (MQ=255) aTGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATACGCTACGCTTATCAGGCCt > 1:29195990/1‑68 (MQ=255) tGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt > 1:28793681/1‑67 (MQ=255) tGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa < 1:21257464/68‑1 (MQ=255) tGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCCACGCTTATCAGGCCTa < 1:33638931/68‑1 (MQ=255) gTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:9379834/1‑68 (MQ=255) gTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:7472139/1‑68 (MQ=255) gTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTAc > 1:11901950/1‑68 (MQ=255) tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGt > 1:4474470/1‑68 (MQ=255) tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGt > 1:23041525/1‑68 (MQ=255) tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGt > 1:25625753/1‑68 (MQ=255) tACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGt > 1:11289810/1‑68 (MQ=255) accatgcaaattcaatatattgcataaaccacgtagGCCTGATGCGCTACGCTTATCAGGCCTACGTg < 1:14900208‑M1/32‑1 (MQ=255) aCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg > 1:24366014/1‑68 (MQ=255) aCTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg > 1:33335791/1‑68 (MQ=255) tggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGa < 1:6987024/68‑1 (MQ=255) tggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGa > 1:26341707/1‑68 (MQ=255) tggctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGa < 1:15398334/68‑1 (MQ=255) gctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAg > 1:2494639/1‑67 (MQ=255) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 1:10012804/67‑1 (MQ=255) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 1:13132778/67‑1 (MQ=255) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 1:33137976/67‑1 (MQ=255) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 1:13834964/67‑1 (MQ=255) ctggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGc < 1:20651496/67‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:27814078/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:34395100/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:36634244/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:8019493/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:12366214/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:1579566/68‑1 (MQ=255) tggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGccc < 1:27341735/68‑1 (MQ=255) gggTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGcc < 1:36289722/66‑1 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcac < 1:404063/67‑1 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcac < 1:15596057/67‑1 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcac < 1:5946261/67‑1 (MQ=255) tCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcac < 1:28450689/67‑1 (MQ=255) gcTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcac < 1:25848699/66‑1 (MQ=255) cTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCcaca < 1:8787471/67‑1 (MQ=255) cTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACaa < 1:24670042/68‑1 (MQ=255) gagaGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAata < 1:29366945/68‑1 (MQ=255) gagaGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAata < 1:18482718/68‑1 (MQ=255) gagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatat < 1:1165414/67‑1 (MQ=255) gagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatat < 1:1065286/67‑1 (MQ=255) gagTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatat < 1:324897/67‑1 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:5437125/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:28228104/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:34074326/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:20133818/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:36967429/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:21952628/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:33856242/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:23871357/1‑68 (MQ=255) agTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatatat > 1:34999285/1‑68 (MQ=255) gTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAatata < 1:1444258/66‑1 (MQ=255) gTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATAtt > 1:1972531/1‑68 (MQ=255) gCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGa < 1:1932369/68‑1 (MQ=255) cTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGaa > 1:2279207/1‑68 (MQ=255) gACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAAtt > 1:30614090/1‑68 (MQ=255) cAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATTTTGAAGTa > 1:8981379/1‑67 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACg < 1:19640413/68‑1 (MQ=255) cGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACg < 1:17908282/68‑1 (MQ=255) aaaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGAt < 1:3887893/67‑1 (MQ=255) | AGAAGTAATAAAAAGGCCAGTCAGTAATGTTACTGGCTGGTCTGAGAGTGCTGACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGGAGCCCACAATATATTGAATTAGCACGATTTCGTAG > CP009273/2542758‑2542892 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |