| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2655809 | NA (NA) | 7 (0.020) | 6/98 | NT | 6.6% | noncoding (142/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 2655842 | 113 (0.250) | noncoding (175/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 173 total aligned reads displayed.
GCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACG > CP009273/2655769‑2655868 | cGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCA > 1:12451669‑M2/1‑67 (MQ=255) cGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCA < 1:3285490‑M2/67‑1 (MQ=255) cGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCA > 1:35963055‑M2/1‑67 (MQ=255) cGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCA < 1:19290203‑M2/67‑1 (MQ=255) cGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCA < 1:14433027‑M2/67‑1 (MQ=255) gTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATC > 1:11044101‑M2/1‑68 (MQ=255) gAACGCCTTATCCGACGTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG < 1:36370304‑M2/68‑1 (MQ=255) gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG > 1:34845381‑M2/1‑68 (MQ=255) gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG > 1:22565224‑M2/1‑68 (MQ=255) gAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG > 1:11771448‑M2/1‑68 (MQ=255) aaCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG < 1:18800996‑M2/67‑1 (MQ=255) aaCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG < 1:33334745‑M2/67‑1 (MQ=255) aaCGCCTTATCCGACCAACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAG > 1:1101419‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGC < 1:1427919‑M2/68‑1 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:4042042‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:71371‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:23695497‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:24556849‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:17446176‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:36007868‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:34151208‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:26292778‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:16398027‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:31765841‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:1619379‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:12206210‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:1569680‑M2/1‑67 (MQ=255) aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:29008256‑M2/1‑67 (MQ=255) aCGCCTTACCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACCCGTCGCATCAGG > 1:15053620‑M2/1‑67 (MQ=255) aCGCCTTAACCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:20305304‑M2/1‑67 (MQ=255) aCGCCGTATCCGACCTACGGTTCTGTGCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG > 1:23328762‑M2/1‑67 (MQ=255) tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCctacag > 1:10149466‑M2/1‑62 (MQ=255) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCctacagt > 1:29582412‑M2/1‑61 (MQ=255) cGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:16819275/1‑68 (MQ=31) cGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:20574262/1‑68 (MQ=31) cGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:9045009/1‑68 (MQ=31) gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg < 1:13220084/68‑1 (MQ=33) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg > 1:19530465/1‑68 (MQ=35) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg > 1:14725186/1‑68 (MQ=35) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg > 1:12694161/1‑68 (MQ=35) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGa > 1:12847338/1‑68 (MQ=37) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGa > 1:13628150/1‑68 (MQ=37) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGa > 1:32958426/1‑68 (MQ=37) ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGGGTCGCATCAGGCAACGGCTGTCGGATgcgg < 1:25350848/68‑1 (MQ=255) ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg > 1:11370134/1‑67 (MQ=35) ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg > 1:22268992/1‑67 (MQ=35) ggTTCTGTTCACTGTAGGCCTGATAAGAAGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg > 1:35888849/1‑67 (MQ=25) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:17561918/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:17824457/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:16599674/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:30286779/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:31271922/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:28571005/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:21179138/1‑68 (MQ=35) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg > 1:17409829/1‑68 (MQ=35) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc < 1:3547880/67‑1 (MQ=35) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc < 1:21386808/67‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:3146851/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:33473970/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:8976950/68‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:35334932/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:704086/68‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:9532429/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:27243280/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:26360385/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:20422932/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:20755241/68‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:1918977/68‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGG < 1:4812762‑M2/46‑1 (MQ=255) tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGa < 1:30706211/68‑1 (MQ=35) tCACTGTAGGCTTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:24939086/1‑67 (MQ=14) tCACTGTAGGCCTGATACGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:35004659/68‑1 (MQ=14) tCACTGTAGGCCTGATAAGACGCATTCCGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6105922/68‑1 (MQ=255) tCACTGTAGGCCTGATAAGACGCATTACTATTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:21206021/68‑1 (MQ=11) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:6377307/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:5546171/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:4674335/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:24647453/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:18362198/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:7548248/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:25983616/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:34124745/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:8402695/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:32732997/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:32454281/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6926510/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:17402737/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6688265/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:16362090/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:15843855/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6159964/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:5284602/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:22907848/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:24777390/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:25503202/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:34782580/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:26687710/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:30760090/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGACGTGAAc > 1:31381053/1‑67 (MQ=14) tCACTGTAGGACTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCCGCGTGAAc > 1:33541363/1‑67 (MQ=255) | GCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACG > CP009273/2655769‑2655868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |