| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2655809 | NA (NA) | 7 (0.020) | 6/98 | NT | 6.6% | noncoding (142/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | CP009273 | = 2655842 | 113 (0.250) | noncoding (175/266 nt) | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
Only 100 of 239 total aligned reads displayed.
ACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAA > CP009273/2655775‑2655909 | aCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGC < 1:1427919‑M2/68‑1 (MQ=255) tATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCctacag > 1:10149466‑M2/1‑62 (MQ=255) aTCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCctacagt > 1:29582412‑M2/1‑61 (MQ=255) cGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc > 1:9045009/1‑68 (MQ=31) gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCg < 1:13220084/68‑1 (MQ=33) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg > 1:14725186/1‑68 (MQ=35) aCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCgg > 1:12694161/1‑68 (MQ=35) ccTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGa < 1:35816591/68‑1 (MQ=37) ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg > 1:22268992/1‑67 (MQ=35) ggTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcg > 1:21477920/1‑67 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:28571005/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:31271922/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:21179138/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:17834549/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:35910962/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:16069559/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:17561918/1‑68 (MQ=35) gTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc > 1:16599674/1‑68 (MQ=35) ttCTGTTCACTGTAGGCCTGTTAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc < 1:7119018/67‑1 (MQ=25) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg > 1:17409829/1‑68 (MQ=35) ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc < 1:24844723/67‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:23647662/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:35291982/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:9532429/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 1:12074897/68‑1 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:33473970/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:3146851/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:12581085/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:26360385/1‑68 (MQ=35) tCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:20422932/1‑68 (MQ=35) tCACTGTAGGCCTGATACGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:35004659/68‑1 (MQ=14) tCACTGTAGGCCTGATAAGACGCATTCCGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6105922/68‑1 (MQ=255) tCACTGTAGGCCTGATAAGACGCATTACTATTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:21206021/68‑1 (MQ=11) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:6377307/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:2232557/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:18362198/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:34124745/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:24647453/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAc > 1:16556478/1‑67 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:25095929/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:26687710/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:25525664/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:25989432/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6926510/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:6688265/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:5284602/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:34517693/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:11326249/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:20680863/68‑1 (MQ=31) tCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACg < 1:15843855/68‑1 (MQ=31) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgaccgccgttg < 1:1187706‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:4726596‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:19077359‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:18272066‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:4843090‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:2055932‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:7571059‑M2/66‑60 (MQ=255) aTCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgcagcatccgacagccgttg < 1:6615528‑M2/66‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgtttcct > 1:30769663‑M2/1‑6 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcct > 1:19670421‑M2/1‑6 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:13973998‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:12896015‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:10452209‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:4351830‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:36768231‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:33799659‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:8972694‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:18302927‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:32547539‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:3183018‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:22855195‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:27694464‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:20380034‑M2/65‑60 (MQ=255) tCAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttg < 1:30602913‑M2/65‑60 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:11658286‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:31174431‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:28119647‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:35411833‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:5893704‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctg < 1:534095‑M2/68‑64 (MQ=255) cAGGCctacagtgaacagaaccgtaggtcggataaggcgatcacgccgcatccgacagccgttgcctg < 1:1529910‑M2/68‑64 (MQ=255) aGGCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctga < 1:27275157‑M2/68‑65 (MQ=255) gCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgat < 1:32979115‑M2/67‑66 (MQ=255) gCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgat < 1:29059018‑M2/67‑66 (MQ=255) gCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgat < 1:16253905‑M2/67‑66 (MQ=255) gCctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgat < 1:1711333‑M2/67‑66 (MQ=255) cctacagtgaacagaaccgtaggtctgataaggcgttcacgccgcatccgacagccgttgcctga > 1:13460032‑M2/1‑1 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgtttcctgatgc < 1:30917225‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:30671923‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:24764899‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:24285575‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:25351015‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:8375261‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:24071196‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:19194042‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatgc < 1:36315969‑M2/68‑68 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatg > 1:32440630‑M2/1‑1 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgatg > 1:5469981‑M2/1‑1 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctgat > 1:15609019‑M2/1‑1 (MQ=255) cctacagtgaacagaaccgtaggtcggataaggcgttcacgccgcatccgacagccgttgcctga > 1:16835124‑M2/1‑1 (MQ=255) | ACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAA > CP009273/2655775‑2655909 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |