| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2749471 | 330 (0.740) | 18 (0.050) | 8/90 | NT | 7.2% | intergenic (+734/‑47) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase |
| ? | CP009273 | = 2749488 | 200 (0.560) | intergenic (+751/‑30) | smpB/intA | trans‑translation protein/CP4‑57 prophage; integrase | |||||
Only 100 of 789 total aligned reads displayed.
TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 | tCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:27116033/1‑68 (MQ=255) cccGCGAAGTCCGAAGAGAACTAATTAAATCCGATCCTTTTAGG‑CCATTGATAGTCCCAACGAAAAGc < 1:32484454/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGaaaa > 1:31952756/1‑66 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:7435912/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:10855741/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:30725770/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:36589039/68‑1 (MQ=255) ccGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGc < 1:26273329/68‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:21144550/67‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGctct < 1:6189087/67‑1 (MQ=255) gAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTa > 1:1948481/1‑68 (MQ=255) aGTCCGATGAGACCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:19258943/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:29855212/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:2778087/67‑1 (MQ=255) aGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTAt < 1:18963498/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:18746832/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:26610559/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:30800836/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:24414666/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTg < 1:29974086/66‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGtt < 1:3585932/68‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:7847789/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:15127366/67‑1 (MQ=255) ccGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGt < 1:4506569/67‑1 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAGGCTCTATTGTTTAcgt < 1:36856180‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgt < 1:24811673‑M2/68‑4 (MQ=255) gagaACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCGCTATTGTTTAcgt < 1:32765869‑M2/68‑4 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAACAGCGCTATTGTTTAcgttggg > 1:31010786‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGGTCTATTGTTTAcgttgg < 1:31540323‑M2/67‑7 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:31184946‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:3532759‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:401671‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:24568127‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttggg > 1:9781523‑M2/1‑61 (MQ=255) aCTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgg > 1:15805849‑M2/1‑61 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:11527479‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:33457664‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:5468763‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:23782796‑M2/1‑60 (MQ=255) cTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggc > 1:14497202‑M2/1‑60 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:19940481‑M2/1‑59 (MQ=255) tAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcc > 1:8456707‑M2/1‑59 (MQ=255) aTTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggccta > 1:33083446‑M2/1‑57 (MQ=255) ttAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:7114756/1‑68 (MQ=255) ttAAATCCGAACCTGTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaa > 1:18210799/1‑68 (MQ=255) tAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaaa < 1:23273559/68‑1 (MQ=255) tAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTaaa < 1:16889941/68‑1 (MQ=255) aaaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatca > 1:27445883‑M2/1‑54 (MQ=255) aaaTCCGAACCATTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAAc < 1:3494016/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:14241703/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:25795127/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:12730354/68‑1 (MQ=255) aaTCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACg < 1:26860105/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:30190888/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa < 1:13286794/68‑1 (MQ=255) tCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:8814666/1‑68 (MQ=255) tCCGAACCTTTTAGGCCAATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCa > 1:8072140/1‑68 (MQ=255) cGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTAcgttgggcctatcaatggg > 1:15544512‑M2/1‑49 (MQ=255) aCCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGgag < 1:11374761/68‑1 (MQ=255) ttttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACt < 1:10025978/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:13762092/68‑1 (MQ=255) ttAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTcc < 1:12471263/68‑1 (MQ=255) ggCCCATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggccttaaaggt > 1:25286696‑M1/1‑21 (MQ=255) cccATTGATAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggccttaaaggttcg > 1:16654952‑M1/1‑19 (MQ=255) cccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:17552331/1‑68 (MQ=255) ccATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATg > 1:9413715/1‑67 (MQ=255) cgttTAGGCCCAACGAAAAGCTGTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCaa < 1:34350065‑M1/64‑1 (MQ=255) gttTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGCCTCCCCATGGCAAg < 1:6623409‑M1/65‑1 (MQ=255) gttTAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAg < 1:25944200‑M1/65‑1 (MQ=255) gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa < 1:2808297/68‑1 (MQ=255) gATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGa < 1:33992168/68‑1 (MQ=255) aTAGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaa > 1:3462020‑M1/1‑12 (MQ=255) aGGCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaatt > 1:495957‑M1/1‑10 (MQ=255) GGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaa < 1:29667602‑M1/67‑1 (MQ=255) gCCCAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattag > 1:17284318‑M1/1‑8 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:22535873‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:24130480‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:5622708‑M1/67‑1 (MQ=255) GCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGaaaaa < 1:21637581‑M1/67‑1 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:12226399‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:16451434‑M1/1‑7 (MQ=255) cccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:36259924‑M1/1‑7 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAcc < 1:22150851‑M1/68‑1 (MQ=255) CCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAAc < 1:30930657‑M1/67‑1 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt < 1:16246795‑M1/67‑62 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt < 1:11346566‑M1/67‑62 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:22726852‑M1/1‑6 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:10940691‑M1/1‑6 (MQ=255) ccAACGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagt > 1:10238676‑M1/1‑6 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGCCTCCCCATGGCAAGAAAAACCa < 1:10489533‑M1/68‑1 (MQ=255) CCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCa < 1:28806520‑M1/68‑1 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:6421602‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:14832273‑M1/68‑66 (MQ=255) aCGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctc < 1:20695744‑M1/68‑66 (MQ=255) ACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGc > 1:28421071‑M1/1‑68 (MQ=255) cGtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct < 1:5050351‑M1/68‑67 (MQ=255) CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:29221806‑M1/68‑1 (MQ=255) CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGcc < 1:20442905‑M1/68‑1 (MQ=255) gtaaacaatagagcttttcgttgggcctatcaatgggcctaaaaggttcggatttaattagttctct > 1:3856273‑M1/1‑1 (MQ=255) GAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCg < 1:28620998‑M1/68‑1 (MQ=255) | TTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTTTTAGGCCCATTGATAGGCCCAACGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCG > CP009273/2749404‑2749538 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |