| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2935053 = | 416 (0.930) | 14 (0.040) | 6/94 | NT | 5.2% | coding (874/918 nt) | gcvA | glycine cleavage system transcriptional activator; autorepressor |
| ? | CP009273 | 2935079 = | 166 (0.440) | coding (848/918 nt) | gcvA | glycine cleavage system transcriptional activator; autorepressor | |||||
Only 100 of 533 total aligned reads displayed.
GTCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACC > CP009273/2934986‑2935120 | tggtcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcc > 1:18667133‑M1/68‑68 (MQ=255)tggtcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcc > 1:35065682‑M1/68‑68 (MQ=255) tCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGc < 1:15235866/67‑1 (MQ=255) tCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGc < 1:24839368/67‑1 (MQ=255) tCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCt > 1:19656644/1‑68 (MQ=255) tCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCt > 1:17201644/1‑68 (MQ=255) tCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCt > 1:30534124/1‑68 (MQ=255) ggtcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCt < 1:11869021‑M1/2‑1 (MQ=255) ggtcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCt < 1:35530414‑M1/2‑1 (MQ=255) tcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCtt < 1:25630744‑M1/3‑1 (MQ=255) tcagtaaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCtt < 1:9058314‑M1/3‑1 (MQ=255) gTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCg > 1:34646832/1‑67 (MQ=255) gTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCg > 1:12995192/1‑67 (MQ=255) gTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCg > 1:31960908/1‑67 (MQ=255) gTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCg > 1:23806133/1‑67 (MQ=255) tCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGcc > 1:4130134/1‑68 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgtgtaaaatagccgcCTTTCGcc > 1:6823910‑M1/60‑67 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCg > 1:23625979‑M1/60‑65 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCGcc > 1:5968024‑M1/60‑67 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCGCCa > 1:36680097‑M1/60‑68 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCGCCa < 1:1807065‑M1/9‑1 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCGCCa > 1:9265656‑M1/60‑68 (MQ=255) aaaaatgctttttatctggtttgtcatgacagtcaggcagaactgggtaaaatagccgcCTTTCGCCa < 1:5478677‑M1/9‑1 (MQ=255) gTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAg < 1:20015842/68‑1 (MQ=255) aCCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGa > 1:16225736/1‑68 (MQ=255) aCCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGa > 1:27586469/1‑68 (MQ=255) cccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGa > 1:21681117/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCTGCTTTCGCCAGGAt > 1:8223247/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:30851284/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:31130657/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:25829690/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:2545588/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:33391396/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:35876295/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:4735917/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:8312307/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:22511474/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:15066627/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:19293212/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:11642235/1‑67 (MQ=255) ccTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAt > 1:6324171/1‑67 (MQ=255) aCGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCAt < 1:35707903/68‑1 (MQ=255) gTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGG‑TCCATTg > 1:3010427/1‑67 (MQ=255) aaaTTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTgg < 1:22738135/67‑1 (MQ=255) aaTTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCg > 1:34352710/1‑68 (MQ=255) aaTTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCg > 1:12509168/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:31368826/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:25265355/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:12197964/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:27080454/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:10586826/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:33603298/1‑68 (MQ=255) ttattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaa > 1:23258400/1‑68 (MQ=255) tattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaaa > 1:10216057/1‑68 (MQ=255) tattGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGaaa > 1:3637419/1‑68 (MQ=255) tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc > 1:14696052/1‑68 (MQ=255) tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc > 1:26331071/1‑68 (MQ=255) tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc > 1:11122657/1‑68 (MQ=255) gTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg < 1:865315/68‑1 (MQ=255) gTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg < 1:21298915/68‑1 (MQ=255) tCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGCATCCATTGGCGAAAggcg > 1:2419810/1‑66 (MQ=255) tAACGAACGCGGAATGTTTCCTGTCCCGCAGCGGCGTTCGCCAGGATCCATAGGCGAAAGGCGGCTAt < 1:17689539/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt < 1:14530500/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt < 1:371544/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt < 1:7410145/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt < 1:5772359/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt < 1:34029677/68‑1 (MQ=255) tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAACCATTGGCGAAAGGCGGCTAt < 1:9621675/68‑1 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:10008881/1‑68 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:18277591/1‑68 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:16973543/1‑68 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:16867813/1‑68 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:27281035/1‑68 (MQ=255) aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt > 1:29950748/1‑68 (MQ=255) cGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAtttt < 1:4352388/68‑1 (MQ=255) aaGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTAc < 1:2862230/67‑1 (MQ=255) aaGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTAc < 1:1577517/67‑1 (MQ=255) ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAg < 1:16388437/67‑1 (MQ=255) ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAg < 1:13638907/67‑1 (MQ=255) ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGt < 1:10454543/68‑1 (MQ=255) cgAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGt < 1:14095448/67‑1 (MQ=255) aaTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACGCAGtt < 1:24256135/67‑1 (MQ=255) aTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCt < 1:35359297/68‑1 (MQ=255) aTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCt < 1:27897620/68‑1 (MQ=255) aTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCt < 1:7201645/68‑1 (MQ=255) tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg > 1:29808571/1‑68 (MQ=255) tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg > 1:5258312/1‑68 (MQ=255) gtaaaatagccgcCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg < 1:35199380‑M1/52‑1 (MQ=255) gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg < 1:22147267/68‑1 (MQ=255) gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg < 1:5001158/68‑1 (MQ=255) gTTCAGCAGCGGCTTTCGCCAGGAGCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg < 1:11303091/68‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGACCGGCGGCTATTTTACCCACTTCTGCCTGACTGt < 1:36104864/67‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt < 1:32737650/67‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt < 1:26106584/67‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt < 1:28162183/67‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt < 1:13923332/67‑1 (MQ=255) tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt < 1:31607483/67‑1 (MQ=255) gcagcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATg > 1:32491962/1‑68 (MQ=255) cgcCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACaa < 1:18978386‑M1/65‑1 (MQ=255) ggCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACaa > 1:30300553/1‑67 (MQ=255) | GTCATGGTCGTACCCTACGTAAATTATTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACC > CP009273/2934986‑2935120 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |