New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2935053 =416 (0.930)14 (0.040) 6/94 NT 5.2% coding (874/918 nt) gcvA glycine cleavage system transcriptional activator; autorepressor
?CP009273 2935079 = 166 (0.440)coding (848/918 nt) gcvA glycine cleavage system transcriptional activator; autorepressor

Only 100 of 343 total aligned reads displayed.

TTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCA  >  CP009273/2935012‑2935145
                                                                   |                                                                  
ttGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAgg                                                                    <  1:19630037/68‑1 (MQ=255)
 tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc                                                                   >  1:36041656/1‑68 (MQ=255)
 tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc                                                                   >  1:11122657/1‑68 (MQ=255)
 tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc                                                                   >  1:11208359/1‑68 (MQ=255)
 tGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggc                                                                   >  1:24757389/1‑68 (MQ=255)
  ttgtcatgacagtcaggcagaactgggtaaaatagccgcctttcgccaatggatcctggcgaaaggcg                                                                  <  1:18978386‑M2/3‑1 (MQ=255)
  gTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg                                                                  >  1:19223960/1‑68 (MQ=255)
  gTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg                                                                  >  1:14848406/1‑68 (MQ=255)
    tCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg                                                                  >  1:1826546/1‑66 (MQ=255)
    tCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAggcg                                                                  >  1:7378455/1‑66 (MQ=255)
    tCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCAATTGACGAAAggcg                                                                  >  1:34452449/1‑66 (MQ=255)
       tAACGAACGCGGAATGTTTCCTGTCCCGCAGCGGCGTTCGCCAGGATCCATAGGCGAAAGGCGGCTAt                                                             <  1:17689539/68‑1 (MQ=255)
       tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt                                                             <  1:874934/68‑1 (MQ=255)
       tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt                                                             <  1:5772359/68‑1 (MQ=255)
       tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAt                                                             <  1:35395524/68‑1 (MQ=255)
       tAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGAACCATTGGCGAAAGGCGGCTAt                                                             <  1:9621675/68‑1 (MQ=255)
       atgacaggcaggcagaactgggtaaaatacccgcctttcgccaatggatcctggcgaaagGCGGCTAt                                                             <  1:12479653‑M2/8‑1 (MQ=255)
         aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt                                                           >  1:10008881/1‑68 (MQ=255)
         aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt                                                           >  1:29950748/1‑68 (MQ=255)
         aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt                                                           >  1:16867813/1‑68 (MQ=255)
         aCGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAttt                                                           >  1:9660533/1‑68 (MQ=255)
         aCGAAAGCGGAATTTTTCTTGTTAAGCAGCGGCTATCGCAATCATACATTGGCGAAACGCCGCTaaat                                                           >  1:31438361/1‑65 (MQ=255)
          cGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAtttt                                                          <  1:4352388/68‑1 (MQ=255)
          cGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAtttt                                                          <  1:23207072/68‑1 (MQ=255)
           gAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTAtttt                                                          >  1:21748751/1‑67 (MQ=255)
           cagtcaggcagaactgggtaaaatagccgcCTTTCGCCAGGGTCCATTGGGGGAAGGCGGCGATTTTa                                                         <  1:14555152‑M1/38‑1 (MQ=255)
             aaGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTAc                                                        <  1:1577517/67‑1 (MQ=255)
               caggcagaactgggtaaaatagccgcctttcgccaatggatcctggcgaaagGCGGCTATTTTAc                                                        <  1:35199380‑M2/13‑1 (MQ=255)
                cggcagaactgggtaaaatagccccctttcgccaatggatcctggcgaaagGCGGCTATTTTACCCAg                                                    <  1:503161‑M2/17‑1 (MQ=255)
                 ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAg                                                    <  1:16388437/67‑1 (MQ=255)
                 ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAg                                                    <  1:34893527/67‑1 (MQ=255)
                 ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGt                                                   <  1:24201006/68‑1 (MQ=255)
                 ggAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGt                                                   <  1:3401214/68‑1 (MQ=255)
                 cgAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGt                                                   <  1:14095448/67‑1 (MQ=255)
                   cagaactgggtaaaatagccgcctttcgccaatggatcctggcgaaagGCGGCTATTTTACCCAg                                                    <  1:11333600‑M2/17‑1 (MQ=255)
                   aaTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGtt                                                  <  1:27731380/67‑1 (MQ=255)
                   aaTTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGtt                                                  <  1:34251913/67‑1 (MQ=255)
                      ttttCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGc                                              <  1:21381051/68‑1 (MQ=255)
                      ttttCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGc                                              <  1:10566037/68‑1 (MQ=255)
                      ttttCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGc                                              <  1:15535632/68‑1 (MQ=255)
                       tttCTTGTTCAGCAGCGTCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGcc                                             <  1:36580885/68‑1 (MQ=255)
                         tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg                                           >  1:5258312/1‑68 (MQ=255)
                         tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg                                           >  1:29808571/1‑68 (MQ=255)
                         tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg                                           <  1:22520804/68‑1 (MQ=255)
                         tCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTg                                           >  1:3693099/1‑68 (MQ=255)
                           ttGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGAc                                         <  1:12090147/68‑1 (MQ=255)
                           ttGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGAc                                         <  1:20698509/68‑1 (MQ=255)
                            tGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACt                                        <  1:31878165/68‑1 (MQ=255)
                             gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg                                       <  1:12408867/68‑1 (MQ=255)
                             gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg                                       <  1:25579178/68‑1 (MQ=255)
                             gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg                                       <  1:22147267/68‑1 (MQ=255)
                             gTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTg                                       <  1:4744107/68‑1 (MQ=255)
                               tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt                                      <  1:26106584/67‑1 (MQ=255)
                               tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt                                      <  1:31607483/67‑1 (MQ=255)
                               tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt                                      <  1:28671200/67‑1 (MQ=255)
                               tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGt                                      <  1:30149981/67‑1 (MQ=255)
                               tCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTc                                     >  1:23965769/1‑68 (MQ=255)
                                 atagccgcCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCAt                                   <  1:32926306‑M1/60‑1 (MQ=255)
                                 atagccgcCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCAt                                   <  1:27956625‑M1/60‑1 (MQ=255)
                                 atagccgcCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCAt                                   <  1:6987291‑M1/60‑1 (MQ=255)
                                 agctgcGGCTTTCGCCAGGATCCATTGGCGATAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCAt                                   <  1:14285016/68‑1 (MQ=255)
                                  gcagcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATg                                  >  1:32491962/1‑68 (MQ=255)
                                    agcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGAc                                >  1:3559278/1‑68 (MQ=255)
                                    agcGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGAc                                >  1:7837862/1‑68 (MQ=255)
                                       ggCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACaa                              >  1:30300553/1‑67 (MQ=255)
                                       ggCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACaa                              >  1:27375567/1‑67 (MQ=255)
                                       ggCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACaa                              >  1:1698761/1‑67 (MQ=255)
                                            TCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGa                        >  1:36415327‑M1/1‑68 (MQ=255)
                                             CGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGAt                       >  1:33324336‑M1/1‑68 (MQ=255)
                                               CCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATaa                     <  1:17304676‑M1/68‑1 (MQ=255)
                                               CCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATaa                     <  1:30800641‑M1/68‑1 (MQ=255)
                                                    aTCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAg                 <  1:25832453/67‑1 (MQ=255)
                                                    aTCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGc                >  1:26278186/1‑68 (MQ=255)
                                                    aTCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGc                >  1:1288662/1‑68 (MQ=255)
                                                    aTCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGc                >  1:18774938/1‑68 (MQ=255)
                                                     tCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCa               <  1:3775455/68‑1 (MQ=255)
                                                     tCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCa               <  1:16143493/68‑1 (MQ=255)
                                                     tCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCa               <  1:11675755/68‑1 (MQ=255)
                                                     tCCATAGGCGAAAGGCGGCTATTTTACCCAGATCTGCCTGACTGTCATGACAAACCAGATAAAAAGCa               <  1:9095723/68‑1 (MQ=255)
                                                       cATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAtt             <  1:25364043/68‑1 (MQ=255)
                                                       cATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAtt             <  1:30449989/68‑1 (MQ=255)
                                                         ttGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAtttt           >  1:15063013/1‑68 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          <  1:10233453‑M2/59‑1 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:9265656‑M2/10‑68 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:568027‑M2/10‑68 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          <  1:6374988‑M2/59‑1 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:35158879‑M2/10‑68 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          <  1:31189436‑M2/59‑1 (MQ=255)
                                                          tggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:13905937‑M2/10‑68 (MQ=255)
                                                           ggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:5968024‑M2/9‑67 (MQ=255)
                                                           ggcgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:27165849‑M2/9‑67 (MQ=255)
                                                             cgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:27184830‑M2/7‑65 (MQ=255)
                                                             cgaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCAttttt          >  1:23625979‑M2/7‑65 (MQ=255)
                                                              gaaagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACt       <  1:534034‑M2/62‑1 (MQ=255)
                                                                aagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGa     <  1:28470374‑M2/64‑1 (MQ=255)
                                                                aagGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGa     <  1:8423417‑M2/64‑1 (MQ=255)
                                                                 agGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGAcc   <  1:24582050‑M2/66‑1 (MQ=255)
                                                                 agGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGAcc   <  1:11869021‑M2/66‑1 (MQ=255)
                                                                  gGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCa  >  1:18667133‑M2/2‑68 (MQ=255)
                                                                  gGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCa  >  1:13987945‑M2/2‑68 (MQ=255)
                                                                   |                                                                  
TTGTTCATAACGAAAGCGGAATTTTTCTTGTTCAGCAGCGGCTTTCGCCAGGATCCATTGGCGAAAGGCGGCTATTTTACCCAGTTCTGCCTGACTGTCATGACAAACCAGATAAAAAGCATTTTTACTGACCA  >  CP009273/2935012‑2935145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.