| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 459 (1.030) | 24 (0.060) | 10/96 | NT | 5.5% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 428 (1.120) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 853 total aligned reads displayed.
TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 | tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:5744786‑M1/68‑1 (MQ=255)tCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGG < 1:31785965‑M1/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:9692932/68‑1 (MQ=255) cGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGgga < 1:17790083/68‑1 (MQ=255) tCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatg > 1:7265837/1‑68 (MQ=255) cAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatg < 1:13071846/67‑1 (MQ=255) aaCGAAACCGGCTGTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:19427925/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:7455453/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:7045417/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:33037783/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:28895513/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:27005082/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:24876768/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga < 1:1918467/68‑1 (MQ=255) aaCGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGggatgga > 1:15556127/1‑68 (MQ=255) aCGAAACCGGCTCTGACTACAGTTCGATGGATAACATGATGGAACTGCTGCTGGCAGGCGggatggat > 1:10519649/1‑68 (MQ=39) caCCGGCTCTGACTCCAGTTCGATGGACAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca < 1:36544394/67‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGTGATGGATatca < 1:6364003/68‑1 (MQ=255) aaCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca < 1:25288213/68‑1 (MQ=255) aCCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATatca > 1:2405105/1‑67 (MQ=255) ctctGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCcgc > 1:30951034/1‑67 (MQ=255) tGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCa > 1:22916853/1‑68 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:15339310/68‑1 (MQ=255) gACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt < 1:31595634/68‑1 (MQ=255) aCTCCAGTTCGACGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCAt > 1:4208887/1‑67 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGGGGGtgggaggaataggcgcatggc > 1:33237383‑M1/1‑46 (MQ=255) cTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGc > 1:6025/1‑68 (MQ=255) tCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGACGGGATGGATATCATCCGCGCCATGCg < 1:11958766/68‑1 (MQ=255) ccAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGt < 1:8147705/68‑1 (MQ=255) cAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTc < 1:25652638/68‑1 (MQ=255) tggATGGATAACATGCTGGAACTGCTGCTGGCATGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:9052889/64‑1 (MQ=255) tCGATGGATCACATGCGGGACCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:12579602/66‑1 (MQ=255) tCGATGGATAACATGCTGGATCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:5051999/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:3859263/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:32909389/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:29392826/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:28005291/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:33503801/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:6763058/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:26016556/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:938703/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:22450985/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:18496800/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTa < 1:7712094/66‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAtt > 1:23485680/1‑68 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:14549935/67‑1 (MQ=255) tCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTAt < 1:29569502/67‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:16247971/68‑1 (MQ=255) gATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAg < 1:19768880/68‑1 (MQ=255) ggATAACATGCTGGAACTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatatcc > 1:27768376‑M1/1‑34 (MQ=255) aTAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTacc > 1:36980347/1‑67 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:25874333‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcc < 1:5382408‑M2/67‑3 (MQ=255) cATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg > 1:24327481‑M2/1‑64 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:11100298‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:28468254‑M2/1‑63 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccg > 1:8381880‑M1/1‑26 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcc > 1:21808771‑M2/1‑62 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:7950666‑M2/66‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgc > 1:21439984‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:31430913‑M2/1‑59 (MQ=255) aaCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcag < 1:28190074‑M2/68‑4 (MQ=255) aCTGCTGCTGGCAGGCGGGtggtactaatagacgcatggcgcggatgatttacataccgcctggcagc > 1:27519920‑M1/1‑19 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:30783735/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:31267958/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:1497175/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:11396218/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:8739109/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:23634334/1‑68 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:16576050/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa > 1:34548107/1‑67 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa < 1:20338431/67‑1 (MQ=255) gctgGCCGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagcagcagt > 1:32115974‑M2/1‑58 (MQ=255) gctgGCATGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGTACAAcc < 1:18913566/68‑1 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac > 1:3242198/1‑67 (MQ=255) gcggGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTATTACCAcccgcctgccagcagcagt > 1:34322053‑M2/1‑49 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAccc < 1:4839309/67‑1 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:29951270/68‑1 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:11592008/68‑1 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctggcagcagcagttcca > 1:26335780‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccggcggcagttcca > 1:36138274‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:21098223‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:35989028‑M1/1‑8 (MQ=255) cAGGCGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttcca > 1:34001567‑M1/1‑8 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagcagcagttccag > 1:18075679‑M2/1‑53 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:35167113/1‑68 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:17483909/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:21925220/67‑1 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:6228582‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:13940365‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcat < 1:30218808‑M1/67‑64 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca < 1:14399198‑M1/66‑63 (MQ=255) cGGGtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagca < 1:17149149‑M1/66‑63 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcagcagcagttccagcat > 1:8899885‑M2/1‑49 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:26695271‑M1/68‑66 (MQ=255) gggtggtactaatagacgcatggcgcggatgatatccatcccgcctgccagcagcagttccagcatgt < 1:10971937‑M1/68‑66 (MQ=255) gggATGGATATCATCGGCGCCATGGGTCTATTAGTACCACCGGCCTGGCAGAACAACCCGGATATgg < 1:10037608/67‑1 (MQ=255) gggATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg < 1:20656060/67‑1 (MQ=255) gggATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg < 1:35649032/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:15734649/67‑1 (MQ=255) | TCGTCAACGAAACCGGCTCTGACTCCAGTTCGATGGATAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAC > CP009273/3348898‑3349031 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |