| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 459 (1.030) | 24 (0.060) | 10/96 | NT | 5.5% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 428 (1.120) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 804 total aligned reads displayed.
TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 | aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:33159275‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:11141047‑M2/68‑4 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgc > 1:28468254‑M2/1‑63 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:14884318‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:6228582‑M2/67‑5 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:17149149‑M2/66‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgc > 1:21439984‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:14478561‑M2/1‑59 (MQ=255) aaCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGcag < 1:28190074‑M2/68‑4 (MQ=255) cctgctgctggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagc > 1:15734270‑M2/2‑55 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:26199648/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:21882527/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:1642384/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:31267958/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:10725531/1‑68 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:8416593/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:8744052/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:35148597/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:5858116/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:25674634/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa > 1:7647972/1‑67 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac > 1:4397383/1‑67 (MQ=255) gctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAcc < 1:19759474/68‑1 (MQ=255) cgggcaGGCGGGATGGATATCATCCGCGCCATGGGTCTATTAGTACCACCCGCCTGGcagcagcagt > 1:31997950‑M2/3‑57 (MQ=255) tgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAAccc < 1:26852315/67‑1 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:15421134/68‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat > 1:24978155/1‑68 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:24585705/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:4012355/67‑1 (MQ=255) cAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa < 1:29534386/67‑1 (MQ=255) aGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:3381500/67‑1 (MQ=255) aGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:9061842/67‑1 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGata < 1:34032639/65‑1 (MQ=255) cGGGATGGATACCATCCGCGCCATGCGTCTATTAGAACCCcccgcctgccagcagcagttccagcat > 1:23494670‑M2/1‑40 (MQ=255) gggATGGATATCATCGGCGCCATGGGTCTATTAGTACCACCGGCCTGGCAGAACAACCCGGATATgg < 1:10037608/67‑1 (MQ=255) gggATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcatgt > 1:3238612‑M2/1‑39 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:20838135/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:10987007/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:19253000/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:1892984/67‑1 (MQ=255) gatggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc < 1:27015176/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:36126366/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:36382879/67‑1 (MQ=255) ggatATCATCCGCGCCATGCGTCTATTCGTACCAcccgcctgccagcagcagttccagcatgttatcc > 1:29098929‑M2/1‑34 (MQ=255) ggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCgg > 1:27739878/1‑68 (MQ=255) atatCATCCGCGCCTTGCGTCTATTAGTAGCACCCGCCTGGCAGAACAACCCGGTTTTGGACCCGGa < 1:34381118/67‑1 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:2736140/1‑66 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:12366915/1‑66 (MQ=255) atcatcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:4708634/1‑65 (MQ=255) atcatcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACt < 1:24039045/68‑1 (MQ=255) tcatcCGCGCCAGGCGTCTATTAGAACCCCCCCCCTGGcagcagcagttccagcatgttatccatcga > 1:17372280‑M2/1‑38 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCg > 1:12882195/1‑68 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCg > 1:5210696/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACGACCCGGATATGGACCCGGAACTGCGt > 1:25314323/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:6738817/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:35754167/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:10324642/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:18006618/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:21017245/1‑68 (MQ=255) gcCATGCGTCTATTAGTACCCCCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGccg > 1:11474004/1‑66 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCctt < 1:35959596/68‑1 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct > 1:13328877/1‑67 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct > 1:16754730/1‑67 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct > 1:30336091/1‑67 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct < 1:6138892/67‑1 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGAGTGCct < 1:17643434/67‑1 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttc < 1:12606288/67‑1 (MQ=255) cGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTg > 1:18602915/1‑67 (MQ=255) gTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGa < 1:23775057/67‑1 (MQ=255) tCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt > 1:33385851/1‑68 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:31074947/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:15970630/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:11680105/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:22998806/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:34667943/67‑1 (MQ=255) aTTAGTACCACCCGCGTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:3276860/1‑68 (MQ=255) ttAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:15133789/1‑67 (MQ=255) ttAGTACCACCCGCCTGGCAGAACAACCCGGATATCGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:11911974/1‑67 (MQ=255) tAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:20108553/1‑66 (MQ=255) tAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTa > 1:18313717/1‑66 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTTAc > 1:3543564/1‑67 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAAc > 1:25901025/1‑67 (MQ=255) gTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt > 1:806758/1‑67 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:21674364/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:7146013/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:8920789/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:25543123/1‑68 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTca > 1:29959884/1‑67 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:9654227/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa < 1:28751257/68‑1 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:14002469/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:22636086/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:31758318/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:28022315/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCATGCCTTCTTTGACTTTAACTCCa > 1:31450829/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 1:37041317/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 1:7296829/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt < 1:30790175/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:22301761/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCATGCCTTCTTTGACTTTAACTCCATg < 1:2028868/68‑1 (MQ=255) | TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |