| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 473 (1.060) | 25 (0.080) | 11/78 | NT | 5.5% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 523 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 804 total aligned reads displayed.
GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 | gggTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTT < 1:6162206‑M1/68‑1 (MQ=255) gTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGt > 1:34234687/1‑68 (MQ=255) ttATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTtta > 1:15907060‑M1/1‑65 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTataaatg > 1:119752‑M1/1‑61 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa > 1:17353535/1‑68 (MQ=255) tGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:12568515/68‑1 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaaatga > 1:25082289/1‑65 (MQ=255) ggAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACaa > 1:16872585/1‑67 (MQ=255) gAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt > 1:2277407/1‑68 (MQ=255) aGTTTTCTGCGCTGGTACCCCGTGGGCAATCTTTTGACACAACCCACCAGGCGTTCTTGTAAACAtt < 1:29517134/67‑1 (MQ=39) aGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt < 1:25839091/67‑1 (MQ=255) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc < 1:20658199/66‑1 (MQ=255) tttCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc < 1:18546696/66‑1 (MQ=255) ttCAGCGCTGGGATCGCGTGGGCAATCTTTAGAGCCAACCCACCAGGCGTTCTTataaatgccgccgt < 1:28044179‑M1/68‑15 (MQ=255) atatggtAACGCGTGGGCAATTTTTAGAGCCTACCCACCAGGCGTTCTTataaatgccgccgttatag < 1:4633434‑M1/65‑20 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:33859187/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaaa > 1:22180777/1‑68 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:22471041/67‑1 (MQ=255) gcTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTATTTTAAACATGACCATTGaata > 1:14558518/1‑66 (MQ=255) ttcgtacCCCGTGGGCAATCTTTAGAGCCAACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:13721485‑M1/65‑22 (MQ=255) atgGCACCCCGTGGGCAATCTTTAGCCCCAACCCACCAGGCGTTCTTataaatgccgccgttatagat < 1:16260732‑M1/67‑22 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTataaatgccgccgttatagataacg > 1:30455144‑M1/1‑43 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACa > 1:18139316/1‑68 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACa > 1:30634095/1‑68 (MQ=255) tACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAATCCCTTTGTAAATAACa > 1:20034759/1‑68 (MQ=38) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTttaaatgaagcccttttagataacgt > 1:36278027‑M1/1‑42 (MQ=255) aCCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACAt < 1:28637433/68‑1 (MQ=255) ccccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg < 1:19320803/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAATCAGTCCGTTTGAGATTACCATgg > 1:25520770/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:16453387/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:23895756/68‑1 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:551634/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:31585372/1‑68 (MQ=255) cccGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg > 1:6917492/1‑68 (MQ=255) gcgTGGGCAATTTGTAGACCCTACCCACCAGGCGTTCTTataaatgccgccgttatagataacgtacc < 1:31878986‑M1/67‑30 (MQ=255) cGTGGGCATTCTTTAGACCCCACCGCCCAGGCGTTGTTGTAAACTTGACCTTTGAAAATAACGTGGTa > 1:16560465/1‑68 (MQ=255) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACTTTACCATTGTAAATAACATggga > 1:7992545/1‑66 (MQ=39) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTa > 1:20292902/1‑68 (MQ=255) cGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAAAATGGTa > 1:31182510/1‑68 (MQ=255) gTGGGCAATTTTTAGAGCCTACCCACCAGGCGTTCTTataaatgccgccgttatagataacgtaccat < 1:27800655‑M1/68‑32 (MQ=255) ggCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt > 1:67860/1‑68 (MQ=255) tCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCt < 1:21374172/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:9044231/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:27002842/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:11785071/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:13086098/68‑1 (MQ=255) tAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCt < 1:7645896/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:33466263/68‑1 (MQ=255) aGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt < 1:34808267/68‑1 (MQ=255) gACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:11370446/1‑67 (MQ=255) gACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:32670142/1‑67 (MQ=255) acccaacccaCCAGGCGTTCTTGTATACATTACCATTTAAAATAACATGGTATATTTCGCTACCtt > 1:14229915/1‑66 (MQ=255) acccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:1797110/1‑66 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:3759402/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:36572785/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:30010266/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCtt > 1:23404163/1‑65 (MQ=255) cccaacccaCCAGGCGTTCTTGTAAAAATTACCATTTTAAATAACATGGTAAATTTAGCTACCtt > 1:27282222/1‑65 (MQ=38) cccaacccaCCAGGCGTTCTTGTAAAAATTACCATTTAAGATAACAGGGTAAATTTGGGGACCtt > 1:12897032/1‑65 (MQ=25) cccaacccaCCAGGCGTTCTTGTAAAAATAACCATTTAAAATAACGTGGTAAATTTCGGTACCtt > 1:15189481/1‑65 (MQ=37) cccaacccaCCAGGCGTTCTTGTAAAAAATACCATTGAAAATAACATGGTTAAATTATCTACAtt > 1:10686864/1‑65 (MQ=25) acccaCCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGcc > 1:15659578/1‑68 (MQ=255) ccaccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctt > 1:26736469‑M1/1‑15 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:8452041‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:24621762‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:30847888‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:13348002‑M1/68‑55 (MQ=255) caccaGGCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgaccttt < 1:24106422‑M1/68‑55 (MQ=255) caccaGGCGTTCTTTTAAACATTACCATTGAAAATAACATGGTATATTTCGCTACCTTCCTGGCCGc > 1:29111646/1‑67 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:17709870/68‑1 (MQ=255) caccaGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCt < 1:4010865/68‑1 (MQ=255) accaGGCGTTCTTataaatgccgccgttaaagataacgtaccatgtagaagaaccttcctggccttt > 1:10496027‑M1/1‑13 (MQ=255) ggCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagacccttcctgacctttcctg > 1:34460171‑M1/1‑9 (MQ=255) ggCGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccag > 1:32273764‑M1/1‑9 (MQ=255) ggCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCAc > 1:18847558/1‑67 (MQ=255) cGTTCTTataaatgccgcggttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:8325247‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct > 1:1005517‑M1/1‑7 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:35626056‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:26327747‑M1/66‑60 (MQ=255) cGTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccagg < 1:24291957‑M1/66‑60 (MQ=255) cGTTCTTGTAAACATTACCATTGCAAATAACATGGTGAATTTCGCTACCTTCCTGGCCGCTCCACg < 1:36065803/66‑1 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggcta < 1:14769897‑M1/68‑63 (MQ=255) gTTCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggct < 1:9393847‑M1/67‑62 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:27569092‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:33053506‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:11034869‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:4362225‑M1/68‑65 (MQ=255) tCTTataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctact < 1:5825363‑M1/68‑65 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:21018925/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:19733662/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:7192514/67‑1 (MQ=255) tCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTg < 1:23681523/67‑1 (MQ=255) ttataactgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:6684361‑M1/68‑67 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:21621458‑M1/68‑67 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:5109298‑M1/68‑67 (MQ=255) ttataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactac < 1:8853826‑M1/68‑67 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca > 1:28373671‑M1/1‑1 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca < 1:12318263‑M1/68‑68 (MQ=255) tataaatgccgccgttatagataacgtaccatgtagaagaaccttcctgacctttccaggctactaca > 1:35238421‑M1/1‑1 (MQ=255) tGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAt < 1:30215758/68‑1 (MQ=255) | GGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATTTCGCTACCTTCCTGGCCGCTCCACGCTTGCAAT > CP009273/3462071‑3462205 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |