| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3462138 | 473 (1.060) | 25 (0.080) | 11/78 | NT | 5.5% | coding (1075/2694 nt) | chiA | periplasmic endochitinase |
| ? | CP009273 | 3462463 = | 523 (1.690) | coding (750/2694 nt) | chiA | periplasmic endochitinase | |||||
Only 100 of 821 total aligned reads displayed.
GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 | ggTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTta > 1:34765705/1‑68 (MQ=255) gTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTtat > 1:17451318/1‑68 (MQ=255) ttACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCATTATtata > 1:3390417/1‑68 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTGTTATATATg > 1:10837873/1‑68 (MQ=255) tGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAAt > 1:32321996/1‑67 (MQ=255) ggCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTTTTatatatc > 1:18364410/1‑66 (MQ=38) gCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATgcc > 1:13534262/1‑68 (MQ=255) gTTTTCTTTCGGATCCCCTGGGCAATATGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:8840309/68‑1 (MQ=39) gTTTTCTTTCGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:5153160/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:17588822/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:27742530/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:17874355/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:29361226/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:25176383/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:24576269/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:13090862/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:12754972/68‑1 (MQ=255) gTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:6682289/68‑1 (MQ=255) gTTTTCTTTCGCAGCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:30917987/68‑1 (MQ=255) gTTTTCTATCGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGt < 1:7208872/68‑1 (MQ=255) ttctttgGCATCCCCTGGGCAATTTTTCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:24237657/68‑1 (MQ=25) ttctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:2675221/68‑1 (MQ=255) ttctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:32690518/68‑1 (MQ=255) ttctttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:16190010/68‑1 (MQ=255) ttctttcGCAGCTCCTGTGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTtat < 1:1904292/68‑1 (MQ=39) ttcGCCTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:23643808/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:26483870/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:26118045/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:10548699/68‑1 (MQ=255) ttcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:16881724/68‑1 (MQ=255) ttcGCACCGCCTGGGCAATTTTTCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:13959629/68‑1 (MQ=38) atcGCATCGCCTGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:3776193/67‑1 (MQ=255) atagCATCGCAAGCGAAATTTGAAGAGCCAACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGAt < 1:4839233/65‑1 (MQ=16) tggaaccccgtgggcaatctttagagccaacccaccaggcgttcttATAAATGCCGCCGTta < 1:20622388‑M2/16‑1 (MQ=255) tcGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATa < 1:22386392/68‑1 (MQ=255) cGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATaa < 1:14880317/68‑1 (MQ=255) taccccgtgggcaatctttagacccaacccaccaggcgttcttATAAATGCCGCCGTTATAGATAACg > 1:30455144‑M2/44‑68 (MQ=255) aTCGCGTGGGCAATTTTCCGCGCCTACCCACCCGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:35171368/68‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACg < 1:6072569/67‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACg < 1:8211629/67‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:9597880/68‑1 (MQ=255) aTCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:13755392/68‑1 (MQ=255) aTCGCCTGGGCAATTTGAAGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:14552826/68‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGt < 1:34615336/65‑1 (MQ=255) gCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:21683859/68‑1 (MQ=255) ccgtgggcaatatttagacccaacccaccaggcgttcttATAAATGCCGCCGTTATAGAt < 1:25660709‑M2/21‑1 (MQ=255) ccgtGGGCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTAcc < 1:7937818/65‑1 (MQ=255) ccTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTTTTATAAATGCCGCCGTTATAGATAACTTACCa > 1:21128145/1‑68 (MQ=255) gtGGGCAATTTTTAGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:2274995/67‑1 (MQ=37) gtGGGCAATTTGTCGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:14714195/67‑1 (MQ=38) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:22118115/68‑1 (MQ=255) cTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCAt < 1:14178985/68‑1 (MQ=255) gCAATTTTCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:11843151/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag > 1:18119529/1‑68 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:4429006/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:15426127/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:28289083/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:33349767/67‑1 (MQ=255) gCAATTTGCCGCGCCTACCCACCAGGCGTTATTATAAAGGCCGCCATTAAAGAAAACTTACCAGGTag > 1:32952759/1‑68 (MQ=25) gCAATTTGACGAGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTa < 1:27197705/67‑1 (MQ=255) cAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTaga > 1:12167532/1‑68 (MQ=255) cAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTag < 1:4636799/67‑1 (MQ=255) cAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGCACCATGTag < 1:29660275/67‑1 (MQ=255) ttGCCGCGCCTACCCACCAGGCGTTCTTATATATGCCGCCGTTATAGATAACCTACCATGGagaaga > 1:23098162/1‑67 (MQ=255) ttGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGCTAACGTACCATGTagaaga > 1:4353444/1‑67 (MQ=255) ttGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATGACGTACCATGTagaaga > 1:27940233/1‑67 (MQ=255) cagcgcCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCt < 1:27517025/66‑1 (MQ=255) cgcgCCTACCCACCAGGCGTTGTTATAGACCCCCCCGTTATAGATGACGTACCATGTATAAGAcccgt > 1:34262676/1‑66 (MQ=19) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:20264337/68‑1 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:6549143/68‑1 (MQ=255) cgcgCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCt < 1:2865138/67‑1 (MQ=255) agcgcCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:2148207/67‑1 (MQ=255) gagcCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCtt < 1:13301188/65‑1 (MQ=255) cccaacccaccaggcgttcttGTAAAAGCCGCCGTTATAGATAACGTACAATCTAGCTGAACCtt > 1:16553166‑M2/22‑65 (MQ=255) ccaccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCtt < 1:19873407‑M2/53‑1 (MQ=255) caccatgcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:5524828‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:19486557‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:35989201‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:18703737‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:24106422‑M2/54‑1 (MQ=255) caccaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:20837104‑M2/54‑1 (MQ=255) caccaggcgttattATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt < 1:12405515‑M2/54‑1 (MQ=255) accaggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCttt > 1:15634816‑M2/14‑67 (MQ=255) ccaGGCGTTCTTGTAAACGAAGCCGTTATAAATAACGTCCTATATATAAGAACCTTCCTGCCCTATcc > 1:5660834/1‑68 (MQ=255) ggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:6839758‑M2/10‑67 (MQ=255) ggcgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAg > 1:17139878‑M2/10‑67 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:36623793‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:35626056‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:31807007‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:31452905‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:8368313‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAgg < 1:9220660‑M2/59‑1 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct > 1:30244197‑M2/8‑68 (MQ=255) cgttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct > 1:1005517‑M2/8‑68 (MQ=255) gttcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGct < 1:23898304‑M2/61‑1 (MQ=255) tcttATAAATTACGCTGTTATATATAACGTACCATTTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:15905893‑M2/64‑1 (MQ=255) tcttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGctact < 1:9394821‑M2/64‑1 (MQ=255) ttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCtactac < 1:24957394‑M2/66‑1 (MQ=255) ttATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCtactac < 1:1110497‑M2/66‑1 (MQ=255) tATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACa < 1:30636427‑M2/67‑1 (MQ=255) | GGTTACTGGCATCGTTTTCTTTCGCATCGCCTGGGCAATTTGCCGCGCCTACCCACCAGGCGTTCTTATAAATGCCGCCGTTATAGATAACGTACCATGTAGAAGAACCTTCCTGACCTTTCCAGGCTACTACA > CP009273/3462396‑3462529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |