| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4375165 = | 508 (1.140) | 18 (0.050) | 9/90 | NT | 5.0% | intergenic (+7/‑45) | yjeM/yjeN | putative transporter/uncharacterized protein |
| ? | CP009273 | 4375192 = | 274 (0.770) | intergenic (+34/‑18) | yjeM/yjeN | putative transporter/uncharacterized protein | |||||
Only 100 of 598 total aligned reads displayed.
AGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGC > CP009273/4375125‑4375259 | agTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg > 1:100267/1‑68 (MQ=255) gtcccggctggtgtcatccataacatttcctgtctttacgccctatcgtcaggtagacgatagggcg < 1:31756038‑M2/1‑1 (MQ=255) gtcccggctggtgtcatccataacatttcctgtctttacgccctatcgtcaggtagacgatagggcg < 1:11062627‑M2/1‑1 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg < 1:14241187/67‑1 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCg < 1:9328360/67‑1 (MQ=255) gTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGt > 1:28479790/1‑68 (MQ=255) ggCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTaa > 1:22475260/1‑68 (MQ=255) aataaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:27221876/65‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAg > 1:23532696/1‑67 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAg < 1:8072515/67‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:6959384/68‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:22601001/68‑1 (MQ=255) aaaaaaTCCGCAGTGGGCGGGGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa < 1:20482781/68‑1 (MQ=255) aaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAg < 1:19192500/68‑1 (MQ=255) aaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAgg < 1:10554499/68‑1 (MQ=255) aaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAgg < 1:20163689/68‑1 (MQ=255) aTCCGCAGTTGTCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGa < 1:3794686/68‑1 (MQ=255) aTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGa < 1:6636883/68‑1 (MQ=255) tgtcatccataaaatttcctgtctttacGCCCTATCGTCTACCTGACGATAGGGGGTAAAGACAGGaa < 1:2405622‑M1/40‑1 (MQ=255) cGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:15719829/68‑1 (MQ=255) cGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAAt < 1:6141840/68‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGtt > 1:34455375/1‑68 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:33069751/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:17352283/67‑1 (MQ=255) aGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt < 1:18853330/67‑1 (MQ=255) gggCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGtt < 1:12171862/65‑1 (MQ=255) gggCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGtt < 1:32310741/65‑1 (MQ=255) cGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGa < 1:31073751/67‑1 (MQ=255) ggTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATg < 1:35719353/68‑1 (MQ=255) gTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATg > 1:36789260/1‑67 (MQ=255) atttcctgtcttttcGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAATTGTTATGGATg < 1:1095723‑M1/52‑1 (MQ=255) atttcctgtctttacGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATg < 1:11936906‑M1/52‑1 (MQ=255) ggAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac < 1:11344013/67‑1 (MQ=255) cctgtctttacGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACAcc < 1:4446045‑M1/57‑1 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:31460182/68‑1 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:21773127/68‑1 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:5024548/68‑1 (MQ=255) tAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:15097312/68‑1 (MQ=255) tAACCCGATGCCCTATCGGCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAg < 1:22980949/68‑1 (MQ=255) aaCCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGc < 1:26112257/68‑1 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGGCAGGAAATGTTATGGATGACACCAGCCg > 1:29669249/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:5182095/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:25868842/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:7322913/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:7518211/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:22162036/1‑68 (MQ=255) cccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg > 1:17736735/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGCCACCAGCCgg > 1:36253623/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGCCACCAGCCgg > 1:3045543/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:18684952/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:26923207/1‑68 (MQ=255) ccGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCgg > 1:1604769/1‑68 (MQ=255) cGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCggg < 1:18087205/68‑1 (MQ=255) tGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAc < 1:19681215/67‑1 (MQ=255) cGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAc < 1:27649948‑M1/66‑1 (MQ=255) GCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAccc < 1:27529460‑M1/68‑1 (MQ=255) GCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAccc < 1:13404518‑M1/68‑1 (MQ=255) GCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAccc < 1:4229932‑M1/68‑1 (MQ=255) GCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGAccc < 1:21197692‑M1/68‑1 (MQ=255) CCCTATCGTCTACCTGAGGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCg < 1:28296510‑M1/68‑1 (MQ=255) CCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCg < 1:26540084‑M1/68‑1 (MQ=255) CCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCgg > 1:15623132‑M1/1‑68 (MQ=255) ATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGCCACCAGCCGGGACGCGGCaa < 1:20955510‑M1/68‑1 (MQ=255) ATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCaa < 1:18979399‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGCCACCAGCCGGGACCCGGCAATa < 1:28752402‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:35045190‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:9739457‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:21517182‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:16921847‑M1/68‑1 (MQ=255) CGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:25509591‑M1/68‑1 (MQ=255) GTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATa < 1:1471547‑M1/67‑1 (MQ=255) CTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAAcc < 1:16494315‑M1/68‑1 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa > 1:27876591/1‑68 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa > 1:4579988/1‑68 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa > 1:28012777/1‑68 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa > 1:29253057/1‑68 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa > 1:29909508/1‑68 (MQ=255) aCCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGCCAATAACCgc > 1:5743974/1‑67 (MQ=255) tGACGATAGGGCGTAAAGACATGAAATGTTATGGATGACAACAGCCGGGACACGGCAATAACCGAAGa > 1:8427053/1‑68 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:13831876/68‑1 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:12636798/68‑1 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:12583897/68‑1 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:30740698/68‑1 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:24405001/68‑1 (MQ=255) tGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGa < 1:17227096/68‑1 (MQ=255) acgatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATg > 1:10288908‑M2/11‑68 (MQ=255) taTAGGGCGTAAAGACATGAAATGTTATGTATGAAACCAGCCGGGACCCGTCAATAAACGAAGATGaa < 1:23203117/67‑1 (MQ=255) gatagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaa > 1:25226837‑M2/9‑68 (MQ=255) atagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa > 1:24854360‑M2/8‑68 (MQ=255) atagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa > 1:34166866‑M2/8‑68 (MQ=255) atagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa > 1:12980720‑M2/8‑68 (MQ=255) atagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa > 1:33829575‑M2/8‑68 (MQ=255) tagggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa < 1:32827200‑M2/61‑1 (MQ=255) aagggcGTAAAGACAGGAAATGTTAAGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGaaa < 1:35358961‑M2/61‑1 (MQ=255) agggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATc > 1:28942617‑M2/6‑68 (MQ=255) gggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCa > 1:14966482‑M2/5‑68 (MQ=255) gggcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCa > 1:7688914‑M2/5‑68 (MQ=255) gcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg > 1:33496244‑M2/3‑68 (MQ=255) gcGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg > 1:8624897‑M2/3‑68 (MQ=255) cGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg < 1:36512378‑M2/66‑1 (MQ=255) | AGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGC > CP009273/4375125‑4375259 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |