| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 248303 | 121 (0.270) | 15 (0.040) | 6/96 | NT | 10.2% | coding (919/1056 nt) | dinB | DNA polymerase IV |
| ? | CP009273 | = 248351 | 159 (0.420) | coding (967/1056 nt) | dinB | DNA polymerase IV | |||||
Only 100 of 322 total aligned reads displayed.
GGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAA > CP009273/248284‑248417 | ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:28663267/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:30400679/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:12205398/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:5429627/1‑68 (MQ=255)ggAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAAc > 1:5027661/1‑68 (MQ=255)cacaccgcgcccgccgcggcgttcatgccaggttttacgcgcggtggcgctttgggcagcgttattcc > 1:21401283‑M2/68‑68 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATTAACg < 1:27627397‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg > 1:29587659‑M2/1‑66 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:585213‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:30982190‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:35772594‑M2/67‑2 (MQ=255) aGCACGTCTGGCCGCGGCTGAATAAAGCAGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACg < 1:2718891‑M2/67‑2 (MQ=255) gCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgc > 1:1819761‑M2/1‑65 (MQ=255) accgcgcccgccgcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattccgcc > 1:10117847‑M2/65‑68 (MQ=255) accgcgcccgccgcggcgttcatcccaggttttacgcgcggtggcgattagatcagctttattccgcc > 1:25139618‑M2/65‑68 (MQ=255) accgcgcccGCCGCGGCTGAATAAAGCTGAGCTAATCGCCCCCGCGCGTAAACCCTGGGATGAAcgcc < 1:14421787‑M1/59‑1 (MQ=255) cGTCTGGCCGCGGCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcg > 1:26328055‑M2/1‑62 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:7000714‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:8636302‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcgg > 1:17587952‑M2/1‑61 (MQ=255) gTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATCAACgccgcgg > 1:36635338‑M2/1‑61 (MQ=255) tCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggc < 1:7628897‑M2/68‑9 (MQ=255) ggccgcggcgGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcggg > 1:1616192‑M1/11‑68 (MQ=255) ggCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACGTGGGATGAACGCCGcggcgg > 1:20597487/1‑67 (MQ=255) ccGCGGCGGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccaga > 1:4420520‑M2/1‑55 (MQ=255) CCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCggcgggc < 1:21185490‑M1/67‑1 (MQ=255) GGCTTAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:28915475‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTACTCGCCACCGCGCGTAAAACCTGGGAGGAACGCCGCGGCGGGCGCGgt > 1:4002389‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:27923221‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:3331920‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:34240639‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:8906469‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:9527094‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:12163079‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:1831364‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:19378549‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:1849411‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGgt > 1:19193615‑M1/1‑68 (MQ=255) GGCTGAATAAAGCTCAACAAATCGCCACCGCGCGTAAAACCTGGGAGGAACGCCGCGGCGGGCGCGgt > 1:13234457‑M1/1‑68 (MQ=255) ctgactgaAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccacacgtgct > 1:34623554‑M2/1‑49 (MQ=255) cTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:19913626‑M2/1‑49 (MQ=255) cTGAATAAAGCGGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgct > 1:15781878‑M2/1‑49 (MQ=255) cTGAATAAACCTGATCAAATCCCCACGGCGCGTAAACCCTGGGATGAACgccgcggccagacgtgct > 1:16720005‑M2/1‑49 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACgccgcggccagacgtgctcc > 1:22376019‑M2/1‑48 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg < 1:33508763/68‑1 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGtgtg < 1:32683729/68‑1 (MQ=255) tGAATAAAGCTGATCTAATCGCCACCGCGCGAAAAACCTGGGATGAACgccgcggccagacgtgctcc > 1:28209472‑M2/1‑48 (MQ=255) gAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGc < 1:10875850/68‑1 (MQ=255) aaaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCg > 1:10054753/1‑65 (MQ=255) aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg < 1:11526940/68‑1 (MQ=255) aaGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtg < 1:34706343/68‑1 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACTCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:4787727/1‑68 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:5296974/1‑68 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:33927030/1‑68 (MQ=255) gCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt > 1:22809907/1‑68 (MQ=255) tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggtgg > 1:29974492/1‑68 (MQ=255) tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt < 1:12766711/66‑1 (MQ=255) tGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCtggt < 1:32237964/66‑1 (MQ=255) gATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg < 1:1532584/68‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:20272561/67‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:26701149/67‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:27773129/67‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:28436868/67‑1 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg > 1:792581/1‑66 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg > 1:1424453/1‑66 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTggg > 1:24689945/1‑66 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTaggg > 1:18569887/1‑67 (MQ=255) tCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGGGTGCGTCTGGTgggg < 1:20078198/67‑1 (MQ=255) tCTAACCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTgggg < 1:24897784/67‑1 (MQ=255) aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGc < 1:31800210/68‑1 (MQ=255) aaTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGAGGGGCTGc < 1:21039244/68‑1 (MQ=255) aTCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCa < 1:13726449/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:14110243/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:15006807/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:25504446/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:34041814/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt < 1:17182686/68‑1 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:6328615/1‑68 (MQ=255) tCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAt > 1:8195130/1‑68 (MQ=255) gCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgt > 1:31450508/1‑68 (MQ=255) gCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgt < 1:16431641/68‑1 (MQ=255) ccACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCAtgtg > 1:36294480/1‑68 (MQ=255) cACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGa < 1:24021353/68‑1 (MQ=255) aCCGCGCGTTAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:23428591/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:12056929/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:29043425/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:35459359/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:21284772/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:33187332/1‑68 (MQ=255) aCCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:30597703/1‑68 (MQ=255) aCCGCGCGGAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGAc > 1:27064004/1‑68 (MQ=255) cgcgcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGt > 1:24566199/1‑68 (MQ=255) gcgTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTg < 1:27381122/67‑1 (MQ=255) gcgGAAAACCTGGGATGAACGCCGCGGCGGGCGCGGGGTGCGTCTGGTGGGGCTGCATGTGACGTTg < 1:20807705/67‑1 (MQ=255) aaCCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAc > 1:30056791/1‑67 (MQ=255) ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc > 1:37049150/1‑67 (MQ=255) ccTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGAccc > 1:32184033/1‑67 (MQ=255) tGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCa < 1:15509539/68‑1 (MQ=255) tGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCa < 1:11782112/68‑1 (MQ=255) aCGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGaa < 1:18676518/67‑1 (MQ=255) | GGAGCACGTCTGGCCGCGGCTGAATAAAGCTGATCTAATCGCCACCGCGCGTAAAACCTGGGATGAACGCCGCGGCGGGCGCGGTGTGCGTCTGGTGGGGCTGCATGTGACGTTGCTTGACCCGCAAATGGAAA > CP009273/248284‑248417 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |