| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 729823 = | 54 (0.120) | 123 (0.280) | 6/110 | NT | 25.1% | pseudogene (235/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | 3760581 = | 683 (1.560) | pseudogene (1/945 nt) | rhsJ | Rhs‑family protein | |||||
Only 100 of 977 total aligned reads displayed.
CTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCT > CP009273/3760514‑3760647 | tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt > 1:28324070/1‑68 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:7392644/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:21824039/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:27463309/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:10106291/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:18999684/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:14026971/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:3976346/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:469546/68‑1 (MQ=255) tAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt > 1:13568769/1‑68 (MQ=255) tAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt < 1:12145691/68‑1 (MQ=255) tAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt < 1:21414454/68‑1 (MQ=255) aGCGTTGATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAc < 1:11209110/67‑1 (MQ=255) aGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGccc > 1:15073945/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:23937551/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:15450194/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:16597500/1‑68 (MQ=255) cGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:5621379/1‑67 (MQ=255) cGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:33166542/1‑67 (MQ=255) cGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:32219337/1‑67 (MQ=255) cGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:31861544/1‑67 (MQ=255) aTAGAGTGAGTTGCCTATGAACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCTACCGGATGGa > 1:12415744/1‑68 (MQ=38) aGCGTGAGTTGCCTATGCACAGTGGGGGATTCCAGCCGGCACGGTGCAGATGCTCGACCGGCTGGaaa > 1:10284009/1‑68 (MQ=255) cGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:37016765/1‑68 (MQ=255) cGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:7177301/1‑68 (MQ=255) cGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:21070369/1‑68 (MQ=255) gTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt < 1:35751787/67‑1 (MQ=255) aGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa > 1:3493750/1‑68 (MQ=255) aGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa > 1:11392284/1‑68 (MQ=255) gTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa > 1:24340604/1‑67 (MQ=255) gTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa > 1:27038582/1‑67 (MQ=255) gTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGATCGACCGGCTGGAAAGTGaaa > 1:2652242/1‑67 (MQ=255) ttGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAt > 1:33945842/1‑67 (MQ=255) ccTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCT‑GAAAGTGAAATCCTg > 1:28621728/1‑67 (MQ=255) aTGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCt < 1:30465989/68‑1 (MQ=255) gCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTg > 1:688140/1‑67 (MQ=255) cacaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGa > 1:28914457/1‑67 (MQ=255) cacaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGa > 1:13256285/1‑67 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:26093919/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc < 1:17127593/68‑1 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:30765853/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:440103/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:29559549/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:21578687/1‑68 (MQ=255) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:36478418/1‑68 (MQ=255) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:17810009/1‑68 (MQ=255) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:16391467/1‑68 (MQ=255) aGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg > 1:20866011/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:19220919/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:12761104/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:5116197/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:28081800/1‑68 (MQ=255) tagtgcaccagccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtg > 1:15936064‑M2/21‑68 (MQ=255) gggggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg < 1:6171750/65‑1 (MQ=255) gggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtga < 1:11635608/67‑1 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:14660238/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:2044370/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:18257790/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:25576209/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgag < 1:23000694/67‑1 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgag < 1:30186381/67‑1 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgag < 1:2775812/67‑1 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgag < 1:8825506/67‑1 (MQ=255) gATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt < 1:29302806/67‑1 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGATAGTGAAATCCTGGCTGCCCGGgtgagtga > 1:7844613/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGCCCGGgtgagtga > 1:31668258/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:23307711/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:5423360/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:24875659/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:19553554/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:8569792/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:3284553/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCGCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:92576/1‑68 (MQ=255) ttCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga < 1:8255342/67‑1 (MQ=255) cgccgGCACGATGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:25938898/1‑68 (MQ=255) ccggtgctgGTGCAGATGCTCGCCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:25373322‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:35321939‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:9415774‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:31230340‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:17547045‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:36823727‑M2/10‑67 (MQ=255) ccggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGGGAGTGAGGaaa > 1:9647433‑M2/10‑67 (MQ=255) cggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg < 1:26364170‑M2/59‑1 (MQ=255) ccgGCACGGTGCAGATGCTCGACCGGCTGGATAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg > 1:36223712/1‑67 (MQ=255) ccgGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg > 1:23665152/1‑67 (MQ=255) ccgGCACGGTGCAGATGCTCGACCGGCAGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg > 1:34084089/1‑67 (MQ=255) ggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:22564717‑M2/8‑68 (MQ=255) ggtgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:16120564‑M2/8‑68 (MQ=255) tgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGCCCGGGTGAGTGAGGAAAgccg > 1:6565778‑M2/6‑67 (MQ=255) tgctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccg > 1:10514926‑M2/6‑67 (MQ=255) gctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:14341123‑M2/5‑68 (MQ=255) gctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:32519623‑M2/5‑68 (MQ=255) gctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc < 1:34485716‑M2/64‑1 (MQ=255) gctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc < 1:33406031‑M2/64‑1 (MQ=255) gctgGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCCGGGGAGTGAGGAAAgccgcc > 1:10933127‑M2/5‑68 (MQ=255) cACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:34177823/1‑68 (MQ=35) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:2006933/1‑67 (MQ=33) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:22280905/1‑67 (MQ=33) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:30957252/1‑67 (MQ=33) gGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCt < 1:18627008‑M2/67‑1 (MQ=255) | CTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTGCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCT > CP009273/3760514‑3760647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |