| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5206612 | 14 (0.290) | 11 (0.320) | 10/182 | 2.7 | 46.9% | intergenic (‑101/‑79) | PP_4582/PP_4583 | membrane protein/putative Peptidase |
| ? | NC_002947 | = 5206633 | 15 (0.430) | intergenic (‑122/‑58) | PP_4582/PP_4583 | membrane protein/putative Peptidase | |||||
CTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCT > NC_002947/5206466‑5206755 | cTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaac > 2:230787‑M1/1‑147 (MQ=255)cTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCCGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAc < 1:1131726/150‑1 (MQ=255) tGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGGAAAGCCGCTCCtccttcg > 1:829144‑M1/1‑143 (MQ=255) gtgtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGGTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcggg < 1:230787‑M1/150‑30 (MQ=255) gTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGAAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttac < 2:583764‑M1/150‑35 (MQ=255) tGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCt < 2:1080901/94‑1 (MQ=255) tGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCt > 1:1080901/1‑94 (MQ=255) gCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGGTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCGGGAACAGGCAACTcc > 1:1168762/1‑150 (MQ=255) cAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTGACCCGCGAAGAGGCCGGCACAGGCAACTCCaa > 1:608086/1‑150 (MQ=255) gaTGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtag < 2:472315‑M1/98‑23 (MQ=255) gaTGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtag > 1:472315‑M1/1‑76 (MQ=255) tATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggttta > 1:205679‑M1/1‑70 (MQ=255) tATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggttta < 2:205679‑M1/103‑34 (MQ=255) tATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGATGAGGCCGGGACAGGCAACTCCAATCAAGAGACCTTCAAt > 1:1239260/1‑150 (MQ=255) aTGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagag < 1:941450‑M2/113‑24 (MQ=255) aTGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagag > 2:941450‑M2/1‑90 (MQ=255) ttttCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagagg < 1:560595‑M1/103‑46 (MQ=255) ttttCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagagg > 2:560595‑M1/1‑58 (MQ=255) ttttCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccg > 2:278335‑M2/1‑79 (MQ=255) ttttCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccg < 1:278335‑M2/106‑28 (MQ=255) gcgcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcggg < 1:831182‑M1/79‑30 (MQ=255) gcgcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcggg > 2:831182‑M1/1‑50 (MQ=255) gcgcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGtt > 1:266607/1‑71 (MQ=255) gcgcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGtt < 2:266607/71‑1 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTgga > 2:326169‑M2/1‑54 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTgga < 1:326169‑M2/57‑4 (MQ=255) tgtgCCGACCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTg > 1:733981‑M2/1‑53 (MQ=255) tgtgCCGACCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTg < 2:733981‑M2/54‑2 (MQ=255) gCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaaga > 1:719893‑M2/1‑50 (MQ=255) gCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaaga < 2:719893‑M2/72‑23 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaa < 1:278335‑M1/106‑80 (MQ=255) cGGCCTCTTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaa > 2:278335‑M1/1‑27 (MQ=255) ccTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaa < 1:560595‑M2/103‑59 (MQ=255) ccTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaa > 2:560595‑M2/1‑45 (MQ=255) ctctTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcat < 1:941450‑M1/113‑91 (MQ=255) ctctTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcat > 2:941450‑M1/1‑23 (MQ=255) tctTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggc > 1:719893‑M1/1‑22 (MQ=255) tctTCGCGGGTAAACCCGCTCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggc < 2:719893‑M1/72‑51 (MQ=255) tctTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTTCGAGGCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGACACCGa > 1:78603/1‑150 (MQ=38) gggTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGa < 2:901918/131‑1 (MQ=255) gggTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGa > 1:901918/1‑131 (MQ=255) gTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatctcttttcctggcttgcacgaacaccatgaccgagaacgac < 2:583764‑M2/150‑117 (MQ=255) tAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcata < 2:205679‑M2/103‑71 (MQ=255) tAAACCCGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcata > 1:205679‑M2/1‑33 (MQ=255) aCCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGcc < 2:976534/101‑1 (MQ=255) aCCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGcc > 1:976534/1‑101 (MQ=255) cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaccactgtctgcgcccggaaaagtgtttatcataggcatctctttgcctggcttgcacgaacaccatgaccgagaacgactacac < 1:230787‑M2/150‑122 (MQ=255) cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgc > 2:831182‑M2/1‑29 (MQ=255) cccGCTCCTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgc < 1:831182‑M2/79‑51 (MQ=255) ccGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGATTACCCGCGAAGCGGCCGGCACAGGCAACCCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCt > 2:284844/1‑150 (MQ=255) tCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacag > 2:326169‑M1/1‑3 (MQ=255) tCCaacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggccggcacag < 1:326169‑M1/57‑55 (MQ=255) caacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggtcggcaca < 2:733981‑M1/54‑54 (MQ=255) caacagggatcgcaccgaggtaggagcgggtttacccgcgaagaggtcggcaca > 1:733981‑M1/1‑1 (MQ=255) cTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatc < 2:472315‑M2/98‑77 (MQ=255) cTACCTCGGTGCGATCCCTGTTggagcgggtttacccgcgaagaggccggcacaggcaaacactgtctgcgcccggaaaagtgtttatcataggcatc > 1:472315‑M2/1‑22 (MQ=255) | CTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAAGCCGACCAGGCCACCGACCCGTATGCCTGGCT > NC_002947/5206466‑5206755 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |