| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 413997 = | 47 (0.960) | 15 (0.390) | 13/200 | 2.4 | 30.4% | intergenic (+14/‑189) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II |
| ? | NC_002947 | 414083 = | 32 (0.840) | intergenic (+100/‑103) | glnE/waaF | glutamate‑ammonia‑ligase adenylyltransferase/ADP‑heptose:LPS heptosyltransferase II | |||||
CGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGAC > NC_002947/413942‑414224 | cGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCACCCACAGGTACTGCACAAGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGACCGCGAATACGCCCtgtg > 2:1277226/1‑150 (MQ=38) cctcccctctttatattcaggctatgtggcggacagtgtaccactcacatggctTATTCGCGGGCAAGCCCGCTCCCACAGCTACTGCACAGGCCCTGAGCAATGTGCAATCCCAGTGGGAGCGGGCTTGCCCGCGAATAGGCcatgtag < 1:122367‑M1/96‑3 (MQ=255) tcccctctttatcttcatgctatgtggcggacagcgtaccacccacatggctTATGCGCGGGCAAGCCCGCTCCCTCCGGTACTGCACGGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGt > 2:122367‑M1/53‑150 (MQ=255) gAAGTGCTGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATGCGCGGGAAAGCCCGCTCCCACGGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGt < 1:18978/150‑1 (MQ=255) aattGCGGCGGATCTGTGGTGAGATGGGTTTAATCTGATACCGTGTTGGCTTATTCCCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTg < 2:1142664/147‑1 (MQ=39) ttGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCt > 1:1111020/1‑150 (MQ=255) ggTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGTAATCCCTGTCGGCGGGAGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGaa < 1:481385/150‑1 (MQ=255) gTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAat > 2:1034264/1‑150 (MQ=255) tttAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCACTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTTTCCGCCACATAGCGTGAata > 1:485697/1‑150 (MQ=255) ttAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAatat > 1:1198969/1‑150 (MQ=255) cTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAaga > 1:491534/1‑150 (MQ=255) tACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATATCCTGAATATAAAGAgggg > 2:331299/1‑150 (MQ=255) actcacatggcctattcgcgggcaagcccgctcccacagggattgcacactgctcagggcccgtgcagtaccggagggagcgggcttgcccgcgcataAGCCATGTGGGTGGTACGCTGTCCGCCACATAGCATGAAGATAAAGAGGGGa > 2:122367‑M2/99‑150 (MQ=255) ctacatggcctattcgcgggcaagcccgctcccactgggattgcacattgctcagggcctgtgcagtagctgtgggagcgggcttgcccgcgaataAGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAgg < 1:122367‑M2/54‑1 (MQ=255) cGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAgg > 1:1267839/1‑150 (MQ=255) ttGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAggg < 1:751739/142‑1 (MQ=255) ttGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAggg > 2:751739/1‑142 (MQ=255) tGGCTGATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTTCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAgg < 1:1277226/150‑1 (MQ=255) ggCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATATCCTGAATATAAAGAGGGGAGGCCAGGc < 1:331299/150‑1 (MQ=255) ggCTTAGTCGCGGGCAAGCTCGCGCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGc < 2:381367/150‑1 (MQ=255) GGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGc > 2:1111020‑M1/1‑150 (MQ=255) AAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCa > 1:360709‑M1/1‑80 (MQ=255) AAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCa < 2:360709‑M1/80‑1 (MQ=255) cctgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACAt > 1:999082‑M2/73‑103 (MQ=255) cctgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACAt < 2:999082‑M2/31‑1 (MQ=255) CCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTcc < 2:888391‑M1/96‑1 (MQ=255) CCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTcc > 1:888391‑M1/1‑96 (MQ=255) ccgctcccacagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGcc > 1:749834‑M2/72‑150 (MQ=255) CCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAg < 1:1040930‑M1/76‑1 (MQ=255) CCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAg > 2:1040930‑M1/1‑76 (MQ=255) CCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCg < 2:255876‑M1/150‑1 (MQ=255) CCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCCGTCGCCTCCCCg < 2:912855‑M1/150‑1 (MQ=255) acagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAggg < 1:508451‑M2/50‑1 (MQ=255) acagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAggg > 2:508451‑M2/64‑113 (MQ=255) cagggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGc < 2:749834‑M2/88‑1 (MQ=255) AGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCg > 2:1267839‑M1/1‑150 (MQ=255) gggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACt > 2:793950‑M2/61‑80 (MQ=255) gggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACt < 1:793950‑M2/20‑1 (MQ=255) gggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTc < 2:1073014‑M2/23‑1 (MQ=255) gggattgcacactgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTc > 1:1073014‑M2/61‑83 (MQ=255) aCTGCTCAGGGCCTGTGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGaa > 2:810582/1‑96 (MQ=38) aCTGCTCAGGGCCTGTGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGaa < 1:810582/96‑1 (MQ=38) acaGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAagag > 2:654943/1‑100 (MQ=255) acaGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAagag < 1:654943/100‑1 (MQ=255) tgctcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAg > 1:181769‑M2/49‑150 (MQ=255) tcagggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCAt < 2:181769‑M2/105‑1 (MQ=255) cTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGt < 1:1208764/120‑1 (MQ=255) cTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGt > 2:1208764/1‑120 (MQ=255) agggcctgtgcagtacctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATga > 2:218314‑M2/44‑150 (MQ=255) aGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGa < 2:1073158/136‑1 (MQ=255) aGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGa > 1:1073158/1‑136 (MQ=255) gtgtGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGc > 1:744730/1‑141 (MQ=255) gtgtGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGc < 2:744730/141‑1 (MQ=255) tgtgCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGt > 2:172617/1‑52 (MQ=255) tgtgCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGt < 1:172617/52‑1 (MQ=255) gCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCca > 2:225870/1‑62 (MQ=255) gCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCca < 1:225870/62‑1 (MQ=255) cccTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGc < 1:13954/117‑1 (MQ=255) cccTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGc > 2:13954/1‑117 (MQ=255) cctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGa < 2:398000‑M2/116‑1 (MQ=255) cctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGa > 1:398000‑M2/29‑144 (MQ=255) cctgtgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTg > 1:601676‑M2/29‑150 (MQ=255) tgggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGccc > 2:869451‑M2/25‑150 (MQ=255) ggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCt < 1:236346‑M2/73‑1 (MQ=255) ggagcgggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCt > 2:236346‑M2/23‑95 (MQ=255) gcgggcaagcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCt > 1:822183‑M2/20‑150 (MQ=255) gggcttgcccgcgaataGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTgg < 1:255876‑M2/133‑1 (MQ=255) ttgcccgcgaataGGTCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGa < 2:412815‑M2/52‑1 (MQ=255) ttgcccgcgaataGGTCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGa > 1:412815‑M2/14‑65 (MQ=255) cccgcgaataGGCCATTAGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGCGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCACGAGCGTTTCTGAACTAAGCATGAGAATCCTGATCATTTGCCCCAGCTGGGTCGGCg > 2:88592‑M2/11‑150 (MQ=255) cgcgaagaGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGAc > 2:1188744‑M2/9‑150 (MQ=255) | CGTGAAGTGCGGCGGATCTGGGGTGAGTTGGGTTTAAGCTGATACCGTGTTGGCTTATTCGCGGGCAAGCCCGCTCCCACAGGTACTGCACAGGCCCTGAGCAGTGTGCAATCCCTGTGGGAGCGGGCTTGCCCGCGAATAGGCCATGTGAGTGGTACACTGTCCGCCACATAGCCTGAATATAAAGAGGGGAGGCCAGGCTGTACCGCAGCCTGTAGCCTCCCCGAGCGTTTCTGGACTAAGCATGAGAATACTGATCATTGGCCCCAGCTGGGTCGGCGAC > NC_002947/413942‑414224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |