| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1015854 | 1 (0.040) | 19 (0.730) | 18/284 | 0.4 | 66.7% | intergenic (‑81/‑687) | SBRG_Ecoli_galE/prfC | SBRG_Ecoli_galE/peptide chain release factor 3 |
| ? | NC_002947 | = 5067412 | 18 (0.690) | coding (1092/1098 nt) | PP_4459 | transposase | |||||
TAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1015714‑1015854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAA < NC_002947/5067412‑5067270 TAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTC < 2:48674/150‑1 ATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAG > 1:349631/1‑150 TTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGA > 1:244133/1‑150 ACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAAC > 1:445557/1‑150 ACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTT > 1:457102/1‑150 CTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTA < 2:59469/150‑1 TTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTAT > 2:210811/1‑150 CACCGGTAACCAGAACTCTCATAAATCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCT > 2:277901/1‑150 TCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCT > 1:23481/1‑150 TCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCT > 2:576852/1‑150 TTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCA > 2:342279/1‑150 ATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCT > 1:140450/1‑150 GCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACC > 1:320331/1‑150 ATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTC < 1:71142/150‑1 TATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGC > 1:302981/1‑150 GCGAAAAGTGTGACATGGAATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTT < 1:38362/150‑1 AATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGT < 1:347974/150‑1 ATAAATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTG < 2:349631/150‑1 ATTAGTGTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAA > 2:142713/1‑150 TAATTGCACACAGGTATGACTTCCAATGTAACCGCTACCACCGGTAACCAGAACTCTCATAATTCGCTCCATTAGGCTTATGGTATGAAATAACCATAGCATAACAAAGATGCGAAAAGTGTGACATGGAATAAATTAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1015714‑1015854‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgTCCTGTCTCAGATAAAACGTTCTCTTTATTCTCGCGTGCCATTGCCTCTCGGGCACCCTGGATCTTGCGCAAGATGTCTTCACCTTTCGCGCTCCAGACGTACCGAGAGGGTTGGGCGTTGTGCAGCGCTAAAAACGTGGTAA < NC_002947/5067412‑5067270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |