| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_002947 | 1,515,811 | (33-bp)2→1 | pseudogene (715‑747/1851 nt) | PP_1325 ← | putative lipoprotein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947 | 1515769 | 1515801 | 33 | 24 [0] | [0] 24 | PP_1325 | putative lipoprotein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1515802 = | 0 (0.000) | 18 (0.930) | 12/210 | 0.5 | 100% | pseudogene (756/1851 nt) | PP_1325 | putative lipoprotein |
| ? | NC_002947 | = 1515768 | 0 (0.000) | pseudogene (790/1851 nt) | PP_1325 | putative lipoprotein | |||||
GCCAACCAACGATCAGACCCTGGCTGGCTGGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515991‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGACAGCTC < NC_002947/1515768‑1515635 GCCAACCAACGATCAGACCCTGGCTGGCTGGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCT < 1:97584/150‑1 GCTGGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCC > 2:325933/1‑150 GCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGA < 2:304732/150‑1 CCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGAC > 1:354422/1‑150 TTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATC > 1:453151/1‑150 AGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCG < 2:213605/150‑1 AGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCT > 2:232394/1‑150 AGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCT > 2:181008/1‑150 CCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGC < 1:112180/150‑1 TGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGC > 1:507307/1‑150 TGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGC > 2:16302/1‑150 TGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCATGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGC > 1:99795/1‑150 AACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCT > 1:435322/1‑150 ACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTT > 1:128921/1‑150 CACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATG < 2:55888/150‑1 CCGGACCACCCTGCCGCCCCGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCC > 2:89132/1‑150 CCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCA > 1:370010/1‑150 AACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAA < 2:419403/150‑1 CCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGC > 2:145670/1‑150 CCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGC > 1:137365/1‑150 CCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGC > 1:137364/1‑150 CCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGC > 1:137350/1‑150 CCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTG < 1:36488/150‑1 GGAGCTGGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGT < 2:354422/150‑1 GGCCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGA > 2:137437/1‑150 CCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGACA < 1:325933/150‑1 CCAGCCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGACA < 2:453151/150‑1 CCAGCCGCTGACCAAGATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGACAGCTC < 2:43007/150‑1 GCCAACCAACGATCAGACCCTGGCTGGCTGGACCAGCCTGGCCTTCGCCGTGAAAAGCGCCGGCACCCTGGAGCAGCAGCAAGCGGCCATCGAAGCCTGGGTCAAACAGCACCCGGACCACCCTGCCGCCCAGCAACTGCCGCTGGCCCTGACCAAGCTCAAGGAGCTGGCCAGCCAGCCGCTGACCAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1515991‑1515802‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaccaagctcaaggagctggccagccagccgctgaccaagATCGCCCTGCTGCTGCCTCAGGAAGGCCCGCTGGCCGGTGTAGCCCGCGCCCTGCGCGATGGCTTCATGGCCGCCCACTTCCAGGCCCAGCAAAGCGGCCAGCCAGCGCCTGCGGTACAGGTGTTCGACAGCTC < NC_002947/1515768‑1515635 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |