| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5441919 = | 22 (0.810) | 4 (0.160) | 4/280 | 2.9 | 17.4% | coding (637/837 nt) | PP_4775 | hypothetical protein |
| ? | NC_002947 | 5441973 = | 17 (0.660) | coding (583/837 nt) | PP_4775 | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCTTACGCGCGGGAAGTGTGGTTGGGTGGTGCGCTGTTCTTTCTGGTGGCCGATACCTATTACCAGTACCTGGCAGACAGCCAGGAATATGTGGTGGTCAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5442073‑5441919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGTAAGGCGGCAGATAACTGACCCGCACGCCGTACGGCGGGGTCACCACGATGTAA > NC_002947/5441973‑5442121 GCCTTACGCGCGGGAAGTGTGGTTGGGTGGTGCGCTGTTCTTTCTGGTGGCCGATACCTATTACCAGTACCTGGCAGACAGCCAGGAATATGTGGTGGTCAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGG < 2:298266/150‑1GCCTTACGCGCGGGAAGTGTGGTTGGGTGGTGCGCTGTTCTTTCTGGTGGCCGATACCTATTACCAGTACCTGGCAGACAGCCAGGAATATGTGGTGGTCAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGG > 2:341457/1‑150 TCAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCG > 2:581681/1‑150 CAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCG < 1:474993/125‑1 CAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCG > 2:474993/1‑125 ACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGT > 1:118316/1‑150 CGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGTAAGGCGGCAGATAACTGACCCGCACGCCGTACGGCGGGGTCACCACGAT < 2:192820/150‑1 CGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGTAAGGCGGCAGATAACTGACCCGCACGCCGTACGGCGGGGTCACCACGAT < 2:192827/150‑1 TTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGTAAGGCGGCAGATAACTGACCCGCACGCCGTACGGCGGGGTCACCACGATGTAA > 1:535982/1‑150 GCCTTACGCGCGGGAAGTGTGGTTGGGTGGTGCGCTGTTCTTTCTGGTGGCCGATACCTATTACCAGTACCTGGCAGACAGCCAGGAATATGTGGTGGTCAACCCGCCGGTCGGCGTGCCGTCGCCCGTGCCGGTGGCCCCGGCAAATGGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5442073‑5441919‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgggtTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCACCCAACCACACTTCCCGCGCGTAAGGCGGCAGATAACTGACCCGCACGCCGTACGGCGGGGTCACCACGATGTAA > NC_002947/5441973‑5442121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |