New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5441919 =	22 (0.810)	4 (0.160)	4/280	2.9	17.4%	coding (637/837 nt)	PP_4775	hypothetical protein
	?	NC_002947	5441973 =	17 (0.660)					coding (583/837 nt)	PP_4775	hypothetical protein
Rejected: Frequency below/above cutoff threshold.

GTAGTGGCTGAGCACAGTGGCCGCCGGTGCGTACGTCGCCGTCGCCGGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCA  >  NC_002947/5441770‑5442046                                                                                                                                                      |                                                                                                                                ttacatcgtggtgaccccgccgtacggcgtgcgggtcagttatctgccgccttacgcgcgggaagtgtggttgggtggtgcgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaa                                                                                                                                 >  1:535982‑M1/150‑150 (MQ=255)     atcgtggtgaccccgccgtacggcgtgcgggtcagttatctgccgccttacgcgcgggaagtgtggttgggtggtgcgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCg                                                                                                                             <  2:192827‑M1/5‑1 (MQ=255)     atcgtggtgaccccgccgtacggcgtgcgggtcagttatctgccgccttacgcgcgggaagtgtggttgggtggtgcgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCg                                                                                                                             <  2:192820‑M1/5‑1 (MQ=255)       gCTGAGCACAGTGGCCGCCGGTGCGTACGTCGCCGTCGCCGGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGcc                                                                                                                           <  1:150235/150‑1 (MQ=255)                 gTGGCCGCCGGTGCGTACGGCGCCGTCGCCGGGTCGACGCCCGACTGGCTCACCGCCCAGCGCTGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCggg                                                                                                                 <  2:123366/150‑1 (MQ=255)                                tACGTCGCCGTCGCCGGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGc                                                                                                  >  1:192820/1‑150 (MQ=255)                                tACGTCGCCGTCGCCGGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGc                                                                                                  >  1:192827/1‑150 (MQ=255)                                           cgccgGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGcc                                                                                       <  1:395386/150‑1 (MQ=255)                                                    gAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACcggcgg                                                                              <  1:342377/150‑1 (MQ=255)                                                    gAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACcggcgg                                                                              <  1:98090/150‑1 (MQ=255)                                                      acgcgcgggaagtgtggttgggtggtgcgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGt                                                                            >  1:118316‑M1/97‑150 (MQ=255)                                                         cgcgggaagtgtggttgggtggtgcgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGa                                                                         >  2:581681‑M1/94‑150 (MQ=255)                                                         ccGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACCTCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGa                                                                         <  2:412469/150‑1 (MQ=255)                                                                        cccAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCt                                                          <  1:312786/150‑1 (MQ=255)                                                                                 cgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTg                                                                          <  1:474993‑M1/56‑1 (MQ=255)                                                                                 cgctgttctttctggtggccgatacctattaccagtacctggcagacagccaggaatatgtggtggtcaACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTg                                                                          >  2:474993‑M1/70‑125 (MQ=255)                                                                                     cTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCAGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAg                                             <  1:109786/150‑1 (MQ=255)                                                                                     cTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCAGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAg                                             <  1:63761/150‑1 (MQ=255)                                                                                      tGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAgg                                            <  2:378086/150‑1 (MQ=255)                                                                                           gCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTg                                       <  2:407219/150‑1 (MQ=255)                                                                                               tcctgctcctgcTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTaa                                   >  1:396698/1‑150 (MQ=255)                                                                                               tcctgctcctgcTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTaa                                   >  1:515190/1‑150 (MQ=255)                                                                                                   gctcctgctGTTCCTGACCCCGGCCATACATCGGATAAGCCACCACGTCATCCCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCCCATATTCCTGGCTGTCTGCCGGGTACTGGTAATAgg                               >  2:45166/1‑150 (MQ=255)                                                                                                        tgctgTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCg                          >  2:252714/1‑150 (MQ=255)                                                                                                        tgctgTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCg                          >  2:560134/1‑150 (MQ=255)                                                                                                               ccTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGccacca                   >  1:68414/1‑150 (MQ=255)                                                                                                                 tGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCaga                 >  1:120119/1‑150 (MQ=255)                                                                                                                 tGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCaga                 >  2:360011/1‑150 (MQ=255)                                                                                                                                aTCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGcacca  >  1:237397/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                GTAGTGGCTGAGCACAGTGGCCGCCGGTGCGTACGTCGCCGTCGCCGGGTCGAAGCCCGACTGGCTCACCGCCCAGCGATGGCACTGGTAGCGGTCCTGCTCCTGCTGTTCCTGACCCTGGCCATACATCGGATAAGCCACCACGTCATACCCGCCATTTGCCGGGGCCACCGGCACGGGCGACGGCACGCCGACCGGCGGGTTGACCACCACATATTCCTGGCTGTCTGCCAGGTACTGGTAATAGGTATCGGCCACCAGAAAGAACAGCGCACCA  >  NC_002947/5441770‑5442046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.