New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2062815	13 (0.480)	3 (0.130)	3/246	3.0	20.1%	intergenic (+39/+89)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	= 2062855	13 (0.570)					intergenic (+79/+49)	PP_1832/PP_1833	oxidase/hypothetical protein

GCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCA  >  NC_002947/2062716‑2063000                                                                                                                                            |                                                                                                                                                  gCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgg                                                                                                                                         >  1:247484‑M2/1‑140 (MQ=255)                                          ttGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAATGGCTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGGAGGAGCGGGTTCACCCCCGAAGAGGCCCGGTCAGGCAATACACCCcaca                                                                                                >  2:350877/1‑150 (MQ=255)                                                  gacgaGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACAATTACTGCGCGATGCCGAAGGGCGGCGCAACCGGCGGTCGTAGGAGCGGGTTAACCCCCGCCGAGGCCACTTCAGGCAAAAAACCCCACAGCGGTAgg                                                                                        >  2:340641/1‑150 (MQ=255)                                                       gCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGACCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggc                                                                                   <  1:195488/150‑1 (MQ=255)                                                            aaTCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggc                                                                              <  1:352920/150‑1 (MQ=255)                                                            aaTCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGAGGGTTCACCCGCGAAGAGGCCAATTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggc                                                                              <  2:205359/150‑1 (MQ=255)                                                            aaTCGCATGGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGAGGCCTACGGGCGGCGCAACCGTCGGCCGTCGGCGCGGGTACACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCggcaaggc                                                                              <  1:535292/150‑1 (MQ=255)                                                                                       gAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgg                                                   <  2:242212/150‑2 (MQ=255)                                                                                        aaCCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCgag                                                  >  2:95975/1‑150 (MQ=255)                                                                                          cccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctg                                                <  2:376159‑M2/150‑100 (MQ=255)                                                                                           ccGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATg                                               <  2:34163/150‑1 (MQ=255)                                                                                             gCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcat                                             <  2:412354‑M2/150‑103 (MQ=255)                                                                                                 cTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGc                                         >  2:304530/1‑150 (MQ=255)                                                                                                           tGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTgg                               >  2:493269/1‑150 (MQ=255)                                                                                                                       aaGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCa                   >  1:407614/1‑150 (MQ=255)                                                                                                                                        cggtcgtaggagcgggttcacccgcgaagcggccggcaatgcgattacagctcgtcgataccaagaaatgcccgcgcagtcacatcgcccgtaaaccgcgcctgcatgccctgctcgctgccatacaagcgcaacgccaggcaaaacggt  >  1:376159‑M2/1‑5 (MQ=255)                                                                                                                                        cggtcgTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCa  <  2:189109/150‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                  GCAGGCGCGGTTTACGGGCGATGTGACTGCGCGGGCATTTCTTGGTATCGACGAGCTGTAATCGCATTGCCGGCCGCTTCGCGGGTGAACCCGCTCCTACATTGACTGCGCGATGCCTAAGGGCGGCGCAACCGTCGGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCA  >  NC_002947/2062716‑2063000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.