New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4529388 =	18 (0.670)	7 (0.290)	5/266	2.4	31.6%	intergenic (+18/‑175)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein
	?	NC_002947	4529423 =	14 (0.570)					intergenic (+53/‑140)	idh/PP_4013	isocitrate dehydrogenase/MutT/nudix family protein

CGACATCGGCGGCTACTACGCCCCGGATGCCGAGCTGACCGCCAAGGTGATGCGCCCAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCA  >  NC_002947/4529277‑4529563                                                                                                                                                   |                                                                                                                                             cGACATCGGCGGCTACTACGCCCCGGATGCCGAGCTGACCGCCAAGGTGATGCGCCCAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCt                                                                                                                                           <  1:591592/150‑1 (MQ=255)              ttcacccgcgaatgcgatggtgaggcaaatgacgccttcgcgggtaaacccgctcctacaaaggccgatgcaggccgccagatatcatttatccagaaAGCACACACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGatat                                                                                                                              >  2:353711‑M1/99‑150 (MQ=255)                      cccGGATGCCGAGCTGACCGCCAAGGTGATGCGCCCAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTggcggc                                                                                                                      >  2:274286/1‑150 (MQ=255)                                              ggTGATGCGCCCAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCgg                                                                                              <  1:454671/150‑1 (MQ=255)                                                       cccAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCcg                                                                                     >  1:122880/1‑150 (MQ=255)                                                                cgctcctacaaaggccgatgcaggccgccagatatcatttatccagaaAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGatat                                                                                                                              <  2:584698‑M1/52‑1 (MQ=255)                                                                cgctcctacaaaggccgatgcaggccgccagatatcatttatccagaaAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGatat                                                                                                                              >  1:584698‑M1/49‑100 (MQ=255)                                                                 aCCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTc                                                                           >  2:4222/1‑150 (MQ=255)                                                                                         cTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTcgcg                                                   >  2:251933/1‑150 (MQ=255)                                                                                          tGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCgg                                                  >  1:244268/1‑150 (MQ=255)                                                                                            tAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGt                                                >  2:578966/1‑150 (MQ=255)                                                                                               atatcatttatccagaaagcacaaaccccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCg                                                                                               <  2:584698‑M2/48‑1 (MQ=255)                                                                                               atatcatttatccagaaagcacaaaccccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCg                                                                                               >  1:584698‑M2/53‑100 (MQ=255)                                                                                               atatcatttatccagaaagcacaaaccccggtgcgtggccggggtgtgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAAGGCGTCATTTGCCTCACCATCGCATTCGCGGGTGaa                                             >  2:353711‑M2/53‑150 (MQ=255)                                                                                                       tGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTAAACCcgctcc                                                                                 <  1:242115/106‑4 (MQ=255)                                                                                                       tGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTAAACCcgctcc                                                                                 >  2:242115/1‑103 (MQ=255)                                                                                                       tGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTCGTAGGAGCGGGTAAACCcgctcc                                                                                 <  1:242086/106‑4 (MQ=255)                                                                                                       tGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTCGTAGGAGCGGGTAAACCcgctcc                                                                                 >  2:242086/1‑103 (MQ=255)                                                                                                           gTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACa                                 <  2:138273/150‑1 (MQ=255)                                                                                                                   acaaaccccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCAt                         >  2:462828‑M2/33‑150 (MQ=255)                                                                                                                   ACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCctacagggagctg                         <  2:357154‑M1/150‑6 (MQ=255)                                                                                                                     aaaccccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGc                       >  2:552301‑M2/31‑150 (MQ=255)                                                                                                                     aaaccccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGc                       >  1:441956‑M2/31‑150 (MQ=255)                                                                                                                     AAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGc                       <  1:451841‑M1/150‑1 (MQ=255)                                                                                                                     AAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGc                       <  2:601346‑M1/150‑1 (MQ=255)                                                                                                                       accccggtgcgtggccggggtttgtgctTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCAc                     >  1:502583‑M2/29‑150 (MQ=255)                                                                                                                             GCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGCGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTc               >  1:274286‑M1/1‑150 (MQ=255)                                                                                                                               cACGCACCGGGGTTTGTGCTTTCTGGATACATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCaa             <  2:488514/150‑1 (MQ=255)                                                                                                                                          gtttgtgctTTCTGGATTAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCGGCGTATGCGTCTTTTGCGTAACCATCGCTTTGGTTGGTGAACCCGCTCCTACAGGGGTCATGCTCGACTTCAAGTATCtgttaa  <  2:413314‑M2/141‑3 (MQ=255)                                                                                                                                                   |                                                                                                                                             CGACATCGGCGGCTACTACGCCCCGGATGCCGAGCTGACCGCCAAGGTGATGCGCCCAAGCCAGACCCTGAACAGCGCCATCGCTGCCCTGTAAGGTTCGCTTGAAGTAACAGCACAAACCCCGGCCACGCACCGGGGTTTGTGCTTTCTGGATAAATGATATCTGGCGGCCTGCATCGGCCTTTGTAGGAGCGGGTTTACCCGCGAATGCGTCATTTGCCTCACCATCGCATTCGCGGGTGAACCCGCTCCTACAGGGGTCATGCACGCCTTCAAGGAGCTGTTCA  >  NC_002947/4529277‑4529563

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.