| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4747991 = | 23 (1.380) | 4 (0.250) | 3/276 | 1.8 | 15.9% | intergenic (‑18/+58) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha |
| ? | NC_002947 | 4748033 = | 20 (1.240) | intergenic (‑60/+16) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4748140‑4747991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4748033‑4748178 AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT < 1:229851/150‑1AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT < 1:229853/150‑1 GCCTGCTTCACTTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGC > 1:108673/1‑150 TTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAG < 1:204557/99‑1 TTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAG > 2:204557/1‑99 TTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGG‑TTTTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCC > 2:256528/1‑150 TTTAAAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGCTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGACCACTTTGTAGTCTTTCATGCC > 1:373868/1‑150 TTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > 1:209838/1‑150 AGGACGAAGAAGCGCCGATCTTCCAGGTGGCCGACTACGGCCTGGTCGCTGACCTGTTCGAAGCGGTTCCGGAGCTGGAAAAGCTGGTCTGATCCGCCTGCTTCACTTATAAAGAACCCGGCCCTCGTTTTGAGGGTCGGGTTTTTTTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4748140‑4747991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4748033‑4748178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |