| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4747991 = | 23 (1.380) | 4 (0.250) | 3/276 | 1.8 | 15.9% | intergenic (‑18/+58) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha |
| ? | NC_002947 | 4748033 = | 20 (1.240) | intergenic (‑60/+16) | PP_4200/etfA | hypothetical protein/electron transfer flavoprotein subunit alpha | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGGCGCTCGCACTTGCCTGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4747884‑4748178 | ggacgaagaagcgccgatcttccaggtggccgactacggcctggtcgctgacctgttcgaagcggttccggagctggaaaagctggtctgatccgcctgcttcacttATAAAAAA‑CCCGACCCTCAAAACGAGGGCCGGGTTCTTTATaa > 2:256528‑M1/108‑150 (MQ=255) gcgcTCGCACTTGCCTGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGt < 2:47347/150‑1 (MQ=255) tCGCACTTGCCTGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAg > 2:355658/1‑150 (MQ=255) gccgatcttccaggtggccgactacggcctggtcgctgacctgttcgaagcggttccggagctggaaaagctggtctgatccgcctgcttcacttATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGc > 1:108673‑M1/96‑150 (MQ=255) tGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGaa > 1:144656/1‑138 (MQ=255) tGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGaa < 2:144656/138‑1 (MQ=255) cGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGa < 2:77204/150‑1 (MQ=255) ccATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCa < 2:378967/150‑1 (MQ=255) cgcCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTc < 2:7129/150‑1 (MQ=255) gcCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCg > 2:142967/1‑150 (MQ=255) ctgttcgaagcggttccggagctggaaaagctggtctgatccgcctgcttcacttATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATaa < 1:204557‑M1/44‑1 (MQ=255) ctgttcgaagcggttccggagctggaaaagctggtctgatccgcctgcttcacttATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATaa > 2:204557‑M1/56‑99 (MQ=255) acacaTGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAAc > 1:373223/1‑150 (MQ=255) cacaTGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACa < 1:264047/150‑1 (MQ=255) acaTGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAg < 2:337682/150‑1 (MQ=255) cAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGGAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGc < 2:254853/150‑1 (MQ=255) ccTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAg > 2:211226/1‑150 (MQ=255) ttCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGt > 2:228649/1‑150 (MQ=255) cgcgCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAACACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCgg < 2:377250/150‑1 (MQ=255) gcctgcttcacttataaagaacccggccctcgttttgagggtcgggtttttttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGgc > 1:108673‑M2/56‑150 (MQ=255) cccTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGct > 1:37314/1‑150 (MQ=255) ttataaagaacccggccctcgttttgagggtcgggtttttttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAg > 2:204557‑M2/45‑99 (MQ=255) ttataaagaacccggccctcgttttgagggtcgggtttttttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAg < 1:204557‑M2/55‑1 (MQ=255) ttataaagaacccggccctcgttttgagggtcgggttttttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTcc > 2:256528‑M2/44‑150 (MQ=255) ATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCt < 1:229851‑M1/150‑1 (MQ=255) ATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCt < 1:229853‑M1/150‑1 (MQ=255) aaaaCCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCttgttg < 1:178132/150‑1 (MQ=255) tCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATc > 2:152322/1‑150 (MQ=255) gggTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCttt < 2:140741/150‑1 (MQ=255) ggTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTc < 1:254423/150‑1 (MQ=255) tttaaAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGCTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGACCACTTTGTAGTCTTTCATGcc > 1:373868‑M2/6‑150 (MQ=255) ttatAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCg > 1:209838‑M2/5‑150 (MQ=255) | CAGGCGCTCGCACTTGCCTGCGGCCATGGCCAGTGGTGACACCAACAGCGCCACACATGCCAGCACCCTGCCCGTTCCGCGCAACGTCATCCCTCACCCCTCAAGCCATAAAAAAACCCGACCCTCAAAACGAGGGCCGGGTTCTTTATAAGTGAAGCAGGCGGATCAGACCAGCTTTTCCAGCTCCGGAACCGCTTCGAACAGGTCAGCGACCAGGCCGTAGTCGGCCACCTGGAAGATCGGCGCTTCTTCGTCCTTGTTGATCGCCACGATCACTTTGGAGTCTTTCATGCCG > NC_002947/4747884‑4748178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |