| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5806026 | 8 (0.480) | 3 (0.190) | 3/276 | 1.8 | 26.4% | coding (283/537 nt) | pilN | type IV pili biogenesis protein PilN |
| ? | NC_002947 | = 5806044 | 9 (0.560) | coding (265/537 nt) | pilN | type IV pili biogenesis protein PilN | |||||
GTCGGCGAAGACACCGGCCAATACACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5805997‑5806026‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgGAGGGCCTGCGCGCCCATCAGGGTGTATTGGCCGGTGTCTTCGCCGACCTTGAAGGGGCGTTGCCTGAAGGTGTGCAGCTAATCGGCCTGAGCCTTGATAGTGGCCGCTTGCAGGTGACAGGGTTGGCTGCGTCCGGTGCAGTG < NC_002947/5806044‑5805901 GTCGGCGAAGACACCGGCCAATACACCCTGGAGGGCCTGCGCGCCCATCAGGGTGTATTGGC < 1:341351/62‑1GTCGGCGAAGACACCGGCCAATACACCCTGGAGGGCCTGCGCGCCCATCAGGGTGTATTGGC > 2:341351/1‑62 ACCCTGGAGGGCCTGCGCGCCCATCAGGGTGTATTGGCCGGTGTCTTCGCCGACCTTGAAGGGGCGTTGCCTGAAGGTGTGCAGCTAATCGGCCTGAGCCTTGATAGTGGCCGCTTGCAGGTGACAGGGTTGGCTGCGTCCGGTGCAGTG > 1:248995/1‑150 GTCGGCGAAGACACCGGCCAATACACCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5805997‑5806026‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgGAGGGCCTGCGCGCCCATCAGGGTGTATTGGCCGGTGTCTTCGCCGACCTTGAAGGGGCGTTGCCTGAAGGTGTGCAGCTAATCGGCCTGAGCCTTGATAGTGGCCGCTTGCAGGTGACAGGGTTGGCTGCGTCCGGTGCAGTG < NC_002947/5806044‑5805901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |