New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5806026	8 (0.480)	3 (0.190)	3/276	1.8	26.4%	coding (283/537 nt)	pilN	type IV pili biogenesis protein PilN
	?	NC_002947	= 5806044	9 (0.560)					coding (265/537 nt)	pilN	type IV pili biogenesis protein PilN

CACTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCTGGGTATTGGCCAGCACCTGCTGCTGCCCGCGTTGGCGGGC  >  NC_002947/5805901‑5806182                                                                                                                                                |                                                                                                                                           cacTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggt                                                                                                                                      >  1:248995‑M2/1‑144 (MQ=255)       aCCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTGGAGGGcctgcgc                                                                                                                                <  1:208538/150‑6 (MQ=255)          ggACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTCTCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCTGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCTGGCCCTCCAGGGCCACCGCACg                                                                                                                             <  2:245183/150‑1 (MQ=255)           gACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACgg                                                                                                                            >  2:316230/1‑150 (MQ=255)                   cAACCCTGTCACCAGCAAGCGGCCACGATCAAGGCTCAGGCCGATTAGCTGCACACCTTCCGGCAACGCCCCTTCAAGGTCGGCGCAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAg                                                                                                                    <  1:235175/150‑1 (MQ=255)                             aCCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCACGTAGCGCTTCATGc                                                                                                          >  2:232947/1‑150 (MQ=255)                                tGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCGTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCcgt                                                                                                       <  1:290892/150‑1 (MQ=255)                                                                                             cAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCt                                          <  1:253323/150‑1 (MQ=255)                                                                                                                 gCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggtgtattggccggtgtcttcgccgac                                                                                                              <  1:341351‑M2/62‑31 (MQ=255)                                                                                                                 gCCAATACACCCTGATGGGCGCGCAGGCCCTCcagggtgtattggccggtgtcttcgccgac                                                                                                              >  2:341351‑M2/1‑32 (MQ=255)                                                                                                                           ccTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGATGTGCACGCACTTCGGCCAGCGGCTGCCACTGCTCATCCTGTCTATCAAGGGTCGCTTGGCGCGGGGTATTGGCCAGCACCTGCTGCTGCCcgc            >  1:253201/1‑150 (MQ=255)                                                                                                                                     gcgcAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCTGGGTATTGGCCAGCACCTGCTGCTGCCCGCGTTGGCGGGc  >  1:203329/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                           CACTGCACCGGACGCAGCCAACCCTGTCACCTGCAAGCGGCCACTATCAAGGCTCAGGCCGATTAGCTGCACACCTTCAGGCAACGCCCCTTCAAGGTCGGCGAAGACACCGGCCAATACACCCTGATGGGCGCGCAGGCCCTCCAGGGCCACCGCACGGGCAAGTAGCGCTTCATGCTGTGCACGCACTTCGGCCAGCGGCTGCAACTGCTCATCCTGTATATCAAGGGTCGCTTGGCGCTGGGTATTGGCCAGCACCTGCTGCTGCCCGCGTTGGCGGGC  >  NC_002947/5805901‑5806182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.