| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 274147 = | 5 (0.300) | 3 (0.180) | 3/282 | 1.9 | 37.7% | coding (423/801 nt) | PP_0221 | methionine ABC transporter substrate‑binding protein |
| ? | NC_002947 | 274172 = | 5 (0.300) | coding (398/801 nt) | PP_0221 | methionine ABC transporter substrate‑binding protein | |||||
TGCACCAGGTCGGCGTCGTCGTAGGCGCGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTT > NC_002947/273998‑274235 | ttcctggaaaacgccaaggctgctgcaggcttcaaccttgtgccttacgccccgggcatcatcaacaacgttggcctgtactcgaaaaagtacaaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatc > 2:146369‑M1/150‑150 (MQ=255) ccAGGTCGGCGTCGTCGTAGGCGCGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCGTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCcagcagca > 2:359275/1‑150 (MQ=255) ccAGGTCGGCGTCGTCGTAGGCGCGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTGTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCGTGAGGGTGATCAACCCGGCCGTGGCcagcagca > 2:359272/1‑150 (MQ=255) ggCGCGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGtt < 2:376012/150‑1 (MQ=255) ggcttcaaccttgtgccttacgccccgggcatcatcaacaacgttggcctgtactcgaaaaagtacaaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGATc > 2:141983‑M1/123‑150 (MQ=255) aGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTg < 1:172663/150‑1 (MQ=255) cAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACtttt > 2:128013/1‑150 (MQ=255) aaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGAt < 1:46102‑M1/27‑1 (MQ=255) aaaagctttgccgagctgcctgaaggcgccagcgtggccatcgccaacgacccgatCAGCAGCAGGCCACGGCCGCTGTTGAt > 2:46102‑M1/57‑83 (MQ=255) | TGCACCAGGTCGGCGTCGTCGTAGGCGCGTACCAGTTGCACCGCCTCGACCTGAAGGATCTTCAGCTTTTTAGGGTTGGCGAGGATGTCAGCCTCGGTGGCCTTGTAGCCCACGCCGGGCTTGAGGGTGATCAACCCGGCCTTGGCCAGCAGCAGCAGGCCACGGCCGCTGTTGATCGGGTCGTTGGCGATGGCCACGCTGGCGCCTTCAGGCAGCTCGGCAAAGCTTTTGTACTTTT > NC_002947/273998‑274235 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |