New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 695669	12 (0.720)	4 (0.250)	4/270	1.5	27.3%	coding (87/1494 nt)	mmsA‑I	methylmalonate‑semialdehyde dehydrogenase
	?	NC_002947	= 695687	10 (0.640)					coding (105/1494 nt)	mmsA‑I	methylmalonate‑semialdehyde dehydrogenase

GATGCCAGGCGTATGCCCGCAGCGCGCGCCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCAGCCTTCCCGGCCTGGCGCAACACCCCTCCGGCCAAGCGCGCCCAGGTGATGTTCCGCTTCAAGCAACTGCTGGAGCAGA  >  NC_002947/695523‑695814                                                                                                                                                   |                                                                                                                                                  gATGCCAGGCGTATGCCCGCAGCGCGCGCCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGcc                                                                                                                                                >  1:353627/1‑150 (MQ=255)       aGGCGTATGCCCGCAGCGCGCGCCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGc                                                                                                                                          >  1:165878/1‑150 (MQ=255)                        gcgcgcCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGttcgaccttgcgaacggcctggccag                                                                                                                         <  2:7948‑M1/150‑27 (MQ=255)                           cgcCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCcg                                                                                                                      <  2:165878/150‑1 (MQ=255)                             ccTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCcgcg                                                                                                                    <  1:337512/150‑1 (MQ=255)                               tGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGttcgaccttgcgaacggcctggccagtggacgg                                                                                                                  <  2:306877‑M1/150‑34 (MQ=255)                                       cTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCg                                                                                                                                               >  1:370012/1‑113 (MQ=255)                                       cTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCg                                                                                                                                               <  2:370012/113‑1 (MQ=255)                                       cTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCa                                                                                                          >  1:92297/1‑150 (MQ=255)                                                               gAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGc                                                                                  >  1:324816/1‑150 (MQ=255)                                                                aGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCa                                                                                 <  1:280286/150‑1 (MQ=255)                                                                             aCCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCAGCCTTCCCGGCCt                                                                    <  1:241716/150‑1 (MQ=255)                                                                                    tCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGttcgaccttgcgaacggcctggccagtggacgggttgaag                                                                                                           >  2:187541‑M1/1‑64 (MQ=255)                                                                                    tCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGttcgaccttgcgaacggcctggccagtggacgggttgaag                                                                                                           <  1:187541‑M1/104‑41 (MQ=255)                                                                                                                 gcACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCAGCCTTCCCGGCCTGGCGCAACACCCCTCCGGCCAAGCGCGCCCAGGTGa                                >  1:336583/1‑150 (MQ=255)                                                                                                                              cTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAActggccagtggacgggttgaagacatcggcggtgcgctcacccttggtaaccagttcgccgtga                                                                 >  2:187541‑M2/1‑40 (MQ=255)                                                                                                                              cTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAActggccagtggacgggttgaagacatcggcggtgcgctcacccttggtaaccagttcgccgtga                                                                 <  1:187541‑M2/104‑65 (MQ=255)                                                                                                                                     ccGTCCACTGGCCAGGCCGTTCGCAAGGTCGAActggccagtggacgggttgaagacatcggcggtgcgctcacccttggtaaccagttcgccgtgaatcaggtgctgaacaatgctcatgcaaaactccagataaacaaaggagagcca            <  2:306877‑M2/150‑118 (MQ=255)                                                                                                                                            cTGGCCAGGCCGTTCGCAAGGTCGAActggccagtggacgggttgaagacatcggcggtgcgctcacccttggtaaccagttcgccgtgaatcaggtgctgaacaatgctcatgcaaaactccagataaacaaaggagagccaggcgcgc     <  2:7948‑M2/150‑125 (MQ=255)                                                                                                                                               gCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCAGCCTTCCCGGCCTGGCGCAACACCCCTCCGGCCAAGCGCGCCCAGGTGATGTTCCGCTTCAAGCAACTGCTGGAGCAGa  >  1:139676/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                  GATGCCAGGCGTATGCCCGCAGCGCGCGCCTGGCTCTCCTTTGTTTATCTGGAGTTTTGCATGAGCATTGTTCAGCACCTGATTCACGGCGAACTGGTTACCAAGGGTGAGCGCACCGCCGATGTCTTCAACCCGTCCACTGGCCAGGCCGTTCGCAAGGTCGAACTGGCCAGCCGCGCAACCGTGCAGGAAGCGATCGACTCGGCCAAGGCAGCCTTCCCGGCCTGGCGCAACACCCCTCCGGCCAAGCGCGCCCAGGTGATGTTCCGCTTCAAGCAACTGCTGGAGCAGA  >  NC_002947/695523‑695814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.