New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 867921	18 (1.080)	5 (0.310)	4/280	1.6	21.0%	intergenic (+16/+161)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase
	?	NC_002947	= 868013	20 (1.220)					intergenic (+108/+69)	PP_0750/mqo‑I	hypothetical protein/malate:quinone oxidoreductase

TGTAGGCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCG  >  NC_002947/867773‑868069                                                                                                                                                     |                                                                                                                                                     tGTAGGCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCgg                                                                                                                                                     >  2:357059/1‑150 (MQ=255)   tAGGCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGcc                                                                                                                                                   >  1:122064/1‑150 (MQ=255)                              acctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAg                                                                                                                        <  2:158836/150‑1 (MQ=255)                                ctggacGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGa                                                                                                                      <  1:340594/150‑1 (MQ=255)                                         aaGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCCCCCCCGCCCACACGGGGCGcgccc                                                                                                             >  1:261389/1‑149 (MQ=255)                                                    cGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCGCCCCCAGGAGTCGCGCCGCACCGGCGGGc                                                                                                  >  2:23954/1‑150 (MQ=255)                                                        aaGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTa                                                                                              <  2:292567/150‑1 (MQ=255)                                                        aaGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTa                                                                                              <  2:250472/150‑1 (MQ=255)                                                        aaGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTa                                                                                              <  2:292566/150‑1 (MQ=255)                                                                    gAGCAGATTGCCGTCCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTgg                                                                                  <  2:25422/150‑1 (MQ=255)                                                                      gCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGgcctcttcgcgggcgcgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtggga                                                                                <  1:357059‑M1/150‑71 (MQ=255)                                                                                     gcgcAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCGGCGGGCATTACCGAACCTGGGGGAGCGGGCCTGCCcgcg                                                                 >  2:218473/1‑150 (MQ=255)                                                                                        cAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAag                                                              <  1:156454/150‑1 (MQ=255)                                                                                           tGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAgg                                                           <  2:91071/150‑1 (MQ=255)                                                                                              cccTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCCTTACCGAACCTGTGGGAGCGGGCCTGCCCGCGGAGAGGGcg                                                        <  2:154235‑M2/150‑3 (MQ=255)                                                                                              cccTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGcg                                                        >  2:295016‑M2/1‑148 (MQ=255)                                                                                               ccTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACCACACTCGCGCCCCACCTGCGGGCAATAACCAACCGGGGGGAGCGCGCAAGCCCCCCAAGAcggcgg                                                       >  2:168352/1‑150 (MQ=255)                                                                                                    gTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGccctcttcgcgggcatgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtg                                                                                   >  2:93066‑M1/1‑50 (MQ=255)                                                                                                    gTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGccctcttcgcgggcatgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtg                                                                                   <  1:93066‑M1/117‑68 (MQ=255)                                                                                                       cATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCGGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCt                                               >  2:157408/1‑150 (MQ=255)                                                                                                                            ccGTGTCTGATCTGTCGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCGGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACaaaa                          <  1:12294/150‑1 (MQ=255)                                                                                                                              gTGGCTGATCTGTAGCCAGTGCCGgcctcttcgcgggcatgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtg                                                                                   >  2:308894‑M1/1‑24 (MQ=255)                                                                                                                              gTGGCTGATCTGTAGCCAGTGCCGgcctcttcgcgggcatgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtg                                                                                   <  1:308894‑M1/91‑68 (MQ=255)                                                                                                                                      tCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGcccctc                <  2:122064/150‑3 (MQ=255)                                                                                                                                          tAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCCCGCCCACAGGAGTCGCCCCCCACCAGCGGGGATTAACCAAACAGTGGGAGCGGGCCAGCCCCCCCATAGGGGGGGACACGCGGAAAAACCCCCACGCACAAAAAAACCCCCCCgggg            >  2:364788/1‑150 (MQ=255)                                                                                                                                                    cgccctcttcgcgggcatgcccgctcccacaggttcggtaatgcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggg  >  2:295016‑M1/1‑2 (MQ=255)                                                                                                                                                    cgccctctccgcgggcaggcccgctcccacaggttcggtaaggcccgcaggtgcggcgcgactcctgtgggagcgggcgcgcccgcgaagaggccggcactggctacagatcagccacgggctttatcgatgatctcgatgtactcaggg  <  2:154235‑M1/150‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TGTAGGCTTCTTCGTCGAAGCTGGCCTGGACCTGGACGGCAAGGACGAGCACGGCAAGACCTTCGTCGAGCAGATTGCCGACCAGCGCAATGCCCCTGAGTACATCGAGATCATCGATAAAGCCCGTGGCTGATCTGTAGCCAGTGCCGGCCTCTTCGCGGGCGCGCCCGCTCCCACAGGAGTCGCGCCGCACCTGCGGGCATTACCGAACCTGTGGGAGCGGGCATGCCCGCGAAGAGGGCGGTACAGGCTGATCAAGCGCCAGGCACAAAAAACGCCCCGAGGGGCGTTTTTGCG  >  NC_002947/867773‑868069

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.