New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1780127	2 (0.120)	8 (0.550)	7/248	0.8	77.2%	intergenic (+44/+62)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	= 1780151	3 (0.210)					intergenic (+68/+38)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

ACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCC  >  NC_002947/1780004‑1780275                                                                                                                            |                                                                                                                                                     aCCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagt                                                                                                                            <  2:41031‑M1/150‑27 (MQ=255) aCCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagt                                                                                                                            <  2:41023‑M1/150‑27 (MQ=255)               gAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgg                                                                                                              >  1:220480‑M2/1‑134 (MQ=255)                                 cTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCTGCGCGGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                                            >  2:131030/1‑150 (MQ=255)                                           tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagtacctgt                                                                                                                      >  1:20906‑M1/1‑82 (MQ=255)                                           tGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagtacctgt                                                                                                                      <  2:20906‑M1/114‑33 (MQ=255)                                                   agtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagta                                                                                                                           <  1:130798‑M1/101‑28 (MQ=255)                                                   agtgagGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagta                                                                                                                           >  2:130798‑M1/1‑74 (MQ=255)                                                                    ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgct                                                                                                                                                >  1:275076‑M1/1‑57 (MQ=255)                                                                    ttCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACagcgct                                                                                                                                                <  2:275076‑M1/63‑7 (MQ=255)                                                                                      aTCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACACGTACTGCGCTGCGCGTGTAATCAGCGCTGTTCCTGGGGGCGCGGGCGGGCCCGCGAAGGGGGTGGTCAGCAGTTTTGCAGGAAGGCGCGAATGCGCGCCGCCCCGGCCATGCAtt                                       >  2:130992/1‑150 (MQ=25)                                                                                                             ccGCTCCCACAGGTACagcgctgatttcaagcgcagcgcagtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctc                >  1:220480‑M1/1‑16 (MQ=255)                                                                                                                     acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca                                            >  1:20906‑M2/1‑32 (MQ=255)                                                                                                                     acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca                                            <  2:20906‑M2/114‑83 (MQ=255)                                                                                                                          tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact                                                    <  1:130798‑M2/101‑75 (MQ=255)                                                                                                                          tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact                                                    >  2:130798‑M2/1‑27 (MQ=255)                                                                                                                           aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt  <  2:41023‑M2/150‑125 (MQ=255)                                                                                                                           aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt  <  2:41031‑M2/150‑125 (MQ=255)                                                                                                                            |                                                                                                                                                     ACCTGGTGGGGGATGAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCC  >  NC_002947/1780004‑1780275

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.