New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1780127	2 (0.120)	8 (0.550)	7/248	0.8	77.2%	intergenic (+44/+62)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase
	?	NC_002947	= 1780151	3 (0.210)					intergenic (+68/+38)	PP_1587/dapC	NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase

GAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCA  >  NC_002947/1780018‑1780298                                                                                                                                      |                                                                                                                                                    gAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgg                                                                                                                                     >  1:220480‑M2/1‑134 (MQ=255)                   cTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCTGCGCGGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGt                                                                                                                   >  2:131030/1‑150 (MQ=255)                                                                        aTCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACACGTACTGCGCTGCGCGTGTAATCAGCGCTGTTCCTGGGGGCGCGGGCGGGCCCGCGAAGGGGGTGGTCAGCAGTTTTGCAGGAAGGCGCGAATGCGCGCCGCCCCGGCCATGCAtt                                                              >  2:130992/1‑150 (MQ=25)                                                                                                       acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca                                                                   >  1:20906‑M2/1‑32 (MQ=255)                                                                                                       acaGGTACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatcca                                                                   <  2:20906‑M2/114‑83 (MQ=255)                                                                                                            tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact                                                                           <  1:130798‑M2/101‑75 (MQ=255)                                                                                                            tACTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcact                                                                           >  2:130798‑M2/1‑27 (MQ=255)                                                                                                             aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt                         <  2:41023‑M2/150‑125 (MQ=255)                                                                                                             aCTGCGCTGCGCTTGAAATCAGCGCTgtacctgtgggagcgggcgtgcccgcgaagggccttgatagggtctacttgactgaacccaggttcgcctcactcatatccagctcacccagtacttgccgcaccacctcatcccccaccaggt                         <  2:41031‑M2/150‑125 (MQ=255)                                                                                                                                 aGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaa                                                                                            >  1:275076‑M2/1‑6 (MQ=255)                                                                                                                                 aGCGCTgtacctgtgggagcgggcgcgcccgcgaagggccttgatagggtctacttgactgaa                                                                                            <  2:275076‑M2/63‑58 (MQ=255)                                                                                                                                    gcTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCa  >  1:144929/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                                    GAGGTGGTGCGGCAAGTACTGGGTGAGCTGGATATGAGTGAGGCGAACCTGGGTTCAGTCAAGTAGACCCTATCAAGGCCCTTCGCGGGCGCGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCA  >  NC_002947/1780018‑1780298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.