New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2052560	11 (0.660)	5 (0.400)	3/212	1.4	33.2%	intergenic (‑88/+87)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein
	?	NC_002947	= 2052596	12 (0.970)					intergenic (‑124/+51)	PP_1824/PP_1825	Smr domain‑containing protein/hypothetical protein

CCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA  >  NC_002947/2052429‑2052708                                                                                                                                    |                                                                                                                                                     ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTTGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc                                                                                                                                    <  2:213315/150‑1 (MQ=255) ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc                                                                                                                                    <  1:119243/150‑1 (MQ=255) ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTGACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGccc                                                                                                                                    <  2:253658/150‑1 (MQ=255)                           aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagc                                                                                                          <  1:131367‑M1/150‑45 (MQ=255)                           aaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagc                                                                                                          <  1:325103‑M1/150‑45 (MQ=255)                              aTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg                                                                                                       <  2:352013‑M1/150‑48 (MQ=255)                                                                               gggggggggGTGGCCCGCCTGGGGGGGCCTCTGCGGGGGTCACCCCGCCCCTCGGGGTTTGTCACCGAGCCCGACGCGGGGGGGGTGCTTGTTGGTGGGGTTACCCCCGCTAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGc                                                      <  2:82453/147‑1 (MQ=255)                                                                                        gtgtGCAGCCTGTGCGGGCCTCTTCGCGGGTGTAACCCCTCCAACGGGGAGGTAAAACAGCCCCAAGACGGCCGGGTGCCGGTGGGGGCGGGGTAAACCCCGAAGAGGCCCCCACACGTTACGCAAAACAAACAATACTGcttggtgatc                                             >  2:367402/1‑143 (MQ=255)                                                                                             cAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg                                                                                                       <  1:39375‑M1/87‑48 (MQ=255)                                                                                             cAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcggg                                                                                                       >  2:39375‑M1/1‑40 (MQ=255)                                                                                                                      tGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTcccgcccg               >  1:75481/1‑150 (MQ=255)                                                                                                                          cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgat           <  2:352013‑M2/150‑104 (MQ=255)                                                                                                                          cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctg                                                                          <  1:39375‑M2/87‑41 (MQ=255)                                                                                                                          cccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctg                                                                          >  2:39375‑M2/1‑47 (MQ=255)                                                                                                                           ccGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCgcggcg          >  2:135529/1‑150 (MQ=255)                                                                                                                             gCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttt        <  1:325103‑M2/150‑107 (MQ=255)                                                                                                                             gCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgatttt        <  1:131367‑M2/150‑107 (MQ=255)                                                                                                                               tCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAg      >  1:116289/1‑150 (MQ=255)                                                                                                                                 cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGctt                                                    <  2:14495/102‑1 (MQ=255)                                                                                                                                 cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGctt                                                    >  1:14495/1‑102 (MQ=255)                                                                                                                                   aCGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGa  <  2:75481/150‑1 (MQ=255)                                                                                                                                    |                                                                                                                                                     CCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTAGTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGGA  >  NC_002947/2052429‑2052708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.