| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2073144 | 11 (0.660) | 4 (0.270) | 4/250 | 1.4 | 29.0% | intergenic (+131/+96) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
| ? | NC_002947 | = 2073181 | 10 (0.690) | intergenic (+168/+59) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor | |||||
TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAG > NC_002947/2072997‑2073293 | ttAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGc < 1:174307/150‑1 (MQ=255)ttAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGc < 2:126002/150‑1 (MQ=255) tAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCgt > 2:353543/1‑150 (MQ=255) ccgccgTGTACGGAACCGTACGCACGATGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATgg < 2:10032/150‑1 (MQ=255) gAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGc < 1:307827/150‑1 (MQ=255) tACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAcacgggcgaagcccgtgccatccaccccggtgttggct < 2:86798‑M1/150‑39 (MQ=255) cGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttc > 2:284547‑M2/1‑147 (MQ=255) cACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgc < 2:321345‑M2/150‑6 (MQ=255) gAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACCTGTGGGAGCGGGCTTGCCCGCGAAcacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagcccgcttgtgtcgcgat < 2:17402‑M1/150‑67 (MQ=255) gAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGaa > 2:115051/1‑150 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAcacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagcccgcttgt > 1:335139‑M1/1‑66 (MQ=255) cTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAcacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagcccgcttgt < 2:335139‑M1/124‑59 (MQ=255) acAGGGCCATTGGGGCTGCTGTGCAGCCCAACGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCTCTGCGGccctttc < 2:349953/149‑5 (MQ=25) aTCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgctcccacaggtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattc < 2:17402‑M2/150‑85 (MQ=255) acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgag > 1:335139‑M2/1‑58 (MQ=255) acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgag < 2:335139‑M2/124‑67 (MQ=255) gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGctct > 1:191225/1‑95 (MQ=255) gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGctct < 2:191225/98‑4 (MQ=255) gCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGc < 2:252723/150‑1 (MQ=255) gcgAAcacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattcacacccgccgtcctctcacaccaccgtg < 2:321345‑M1/150‑146 (MQ=255) gcgAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGa > 1:287111/1‑150 (MQ=255) gAAcacgggcgaagcccgtgccatccaccacggtgttggcttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattcacacccgccgtcctctcacaccaccgtgcg > 2:284547‑M1/1‑3 (MQ=255) aGCCAACACCGGGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattcacacccgccgtcctctcacaccaccgtgcgta < 2:86798‑M2/150‑113 (MQ=255) | TTAGCCGCGTAACCTGAACCGCCGTGTACGGAACCGTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGAC‑‑‑‑ACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAG > NC_002947/2072997‑2073293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |