New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2073144	11 (0.660)	4 (0.270)	4/250	1.4	29.0%	intergenic (+131/+96)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor
	?	NC_002947	= 2073181	10 (0.690)					intergenic (+168/+59)	PP_1846/PP_1847	group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor

CGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTA  >  NC_002947/2073035‑2073311                                                                                                                                                   |                                                                                                                                   cGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttc                                                                                                                                 >  2:284547‑M2/1‑147 (MQ=255)   cACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgc                                                                                                                               <  2:321345‑M2/150‑6 (MQ=255)                               gAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGaa                                                                                                   >  2:115051/1‑150 (MQ=255)                                                     acAGGGCCATTGGGGCTGCTGTGCAGCCCAACGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCTCTGCGGccctttc                                                                             <  2:349953/149‑5 (MQ=25)                                                                                  aTCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgctcccacaggtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattc                                                <  2:17402‑M2/150‑85 (MQ=255)                                                                                          acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgag                                                                  >  1:335139‑M2/1‑58 (MQ=255)                                                                                          acaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgag                                                                  <  2:335139‑M2/124‑67 (MQ=255)                                                                                              gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGctct                                                                                        >  1:191225/1‑95 (MQ=255)                                                                                              gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGctct                                                                                        <  2:191225/98‑4 (MQ=255)                                                                                                  gCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGc                                <  2:252723/150‑1 (MQ=255)                                                                                                          gcgAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGa                        >  1:287111/1‑150 (MQ=255)                                                                                                              aGCCAACACCGGGGTGGATGGCACGGGCTTCGCCCGTGttcgcgggcaagcccgcttgtgtcgcgatgggctgcacagcagccccaatggccctgaaaatcgagtaggaggcggattcacacccgccgtcctctcacaccaccgtgcgta                    <  2:86798‑M2/150‑113 (MQ=255)                                                                                                                  aaCACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAg                >  2:206003/1‑150 (MQ=255)                                                                                                                                tGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTa  >  1:287780/1‑150 (MQ=255)                                                                                                                                          ttCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAg     <  1:183276/137‑1 (MQ=255)                                                                                                                                          ttCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAg     >  2:183276/1‑137 (MQ=255)                                                                                                                                                   |                                                                                                                                   CGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTCAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTA  >  NC_002947/2073035‑2073311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.