New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2335236	14 (0.840)	4 (0.240)	4/280	1.6	22.4%	coding (203/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase
	?	NC_002947	= 2335264	14 (0.860)					coding (231/1185 nt)	fadA	3‑ketoacyl‑CoA thiolase

TGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCA  >  NC_002947/2335107‑2335383                                                                                                                                  |                                                                                                                                                    tGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGAGCAACCCGGGTCGGCTGTCGGCGCTGgccg                                                                                                                                 >  2:348539/1‑150 (MQ=255)        ccccAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGtcggccggcggccagcgccgacagccg                                                                                                                          >  1:375742‑M1/1‑123 (MQ=255)            aGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGtcggccggcggccagcgccgacagccgaccc                                                                                                                      <  2:375742‑M1/150‑32 (MQ=255)                                                                                        tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa                                          <  1:174480/150‑1 (MQ=255)                                                                                        tGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGa                                          >  2:55608/1‑150 (MQ=255)                                                                                        accggACAGACATGCATAGAGTCACTGACGCGATCAACCATGTTAGGATGTCGGCGCAGGACTCCGGCCAGCCAAAATCGGTCAGCGTTCAGAACGACGACCGACAGAGTGCTACAGGCATGATGGCCATTGCCACGGCGGCGAAGCAGa                                          >  2:249139/4‑150 (MQ=255)                                                                                            gACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCAt                                      >  2:9849/1‑150 (MQ=255)                                                                                               tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGcaggccggcggccagcgccgacagccgacccg                                                                                                                     <  2:159406‑M1/68‑33 (MQ=255)                                                                                               tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGcaggccggcggccagcgccgacagccgacccg                                                                                                                     >  1:159406‑M1/1‑36 (MQ=255)                                                                                               tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt                                   >  1:81194/1‑150 (MQ=255)                                                                                               tGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGt                                   >  1:81192/1‑150 (MQ=255)                                                                                                gCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGtt                                  >  2:251983/1‑150 (MQ=255)                                                                                                 ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc                                                                                        >  2:197/1‑95 (MQ=255)                                                                                                 ccATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGc                                                                                        <  1:197/95‑1 (MQ=255)                                                                                                  cATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGa                                <  2:11978/150‑1 (MQ=255)                                                                                                   aTGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGAt                               <  2:173361/150‑1 (MQ=255)                                                                                                    tGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATg                              >  1:319685/1‑150 (MQ=255)                                                                                                          gCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGc                        <  1:51121/150‑1 (MQ=255)                                                                                                                               cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca                                                                                     <  2:159406‑M2/68‑37 (MQ=255)                                                                                                                               cGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGcccgggttgatcgcggcagtgccgctctgcatggca                                                                                     >  1:159406‑M2/1‑32 (MQ=255)                                                                                                                                gggTCGGCTGTCGGCGCTGGCCGCCGGCCGAcccgggttgatcgcggcagtgccgctctgcatggcagtccccagcaccaggtcatcgacctgcgccggttcgatgccagcacgttctactgcggcgcggatagcgacagccgtcatgct  <  2:375742‑M2/150‑120 (MQ=255)                                                                                                                                  |                                                                                                                                                    TGAAAACCCCCAGCATGACGGCTGTCGCTATCCGCGCCGCAGTAGAACGTGCTGGCATCGAACCGGCGCAGGTCGATGACCTGGTGCTGGGGACTGCCATGCAGAGCGGCACTGCCGCGATCAACCCGGGTCGGCTGTCGGCGCTGGCCGCCGGCCTGCCCCAATCGGTCAGCGGTCAGACCGTCGACCGCCAGTGTGCTTCAGGCCTGATGGCCATTGCCACGGCGGCGAAGCAGATCATGGTTGATGGCATGCAGGTGACCATTGGCGCAGGTCA  >  NC_002947/2335107‑2335383

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.